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Mechanistic models are important tools to describe and understand biological processes. However, they typically rely on unknown parameters, the estimation of which can be challenging for large and complex systems. We present pyPESTO, a…

Non-invasive parametrisation of physics-based battery models can be performed by fitting the model to electrochemical impedance spectroscopy (EIS) data containing features related to the different physical processes. However, this requires…

Systems and Control · Electrical Eng. & Systems 2025-06-11 Noël Hallemans , Nicola E. Courtier , Colin P. Please , Brady Planden , Rishit Dhoot , Robert Timms , S. Jon chapman , David Howey , Stephen R. Duncan

At many scales in neuroscience, appropriate mathematical models take the form of complex dynamical systems. Parametrising such models to conform to the multitude of available experimental constraints is a global nonlinear optimisation…

This contribution presents a parameter identification methodology for the accurate and fast estimation of model parameters in a pseudo-two-dimensional (P2D) battery model. The methodology consists of three key elements. First, the data for…

Systems and Control · Electrical Eng. & Systems 2025-07-21 L. D. Couto , K. Haghverdi , F. Guo , K. Trad , G. Mulder

COBRAPRO is a new open-source physics-based battery modeling software with the capability to conduct closed-loop parameter optimization using experimental data. Physics-based battery models require systematic parameter calibration to…

Systems and Control · Electrical Eng. & Systems 2024-04-18 Sara Ha , Simona Onori

This paper introduces ROmodel, an open source Python package extending the modeling capabilities of the algebraic modeling language Pyomo to robust optimization problems. ROmodel helps practitioners transition from deterministic to robust…

Optimization and Control · Mathematics 2021-05-19 Johannes Wiebe , Ruth Misener

Hyperparameter tuning is a fundamental aspect of machine learning research. Setting up the infrastructure for systematic optimization of hyperparameters can take a significant amount of time. Here, we present PyHopper, a black-box…

Machine Learning · Computer Science 2022-10-11 Mathias Lechner , Ramin Hasani , Philipp Neubauer , Sophie Neubauer , Daniela Rus

Essential to various practical applications of lithium-ion batteries is the availability of accurate equivalent circuit models. This paper presents a new coupled electro-thermal model for batteries and studies how to extract it from data.…

Systems and Control · Electrical Eng. & Systems 2024-08-21 Hao Tu , Xinfan Lin , Yebin Wang , Huazhen Fang

Atomistic models like tight-binding (TB), bond-order potentials (BOP) and classical potentials describe the interatomic interaction in terms of mathematical functions with parameters that need to be adjusted for a particular material. The…

Computational Physics · Physics 2019-07-30 Alvin Noe Ladines , Thomas Hammerschmidt , Ralf Drautz

PHYSBO (optimization tools for PHYSics based on Bayesian Optimization) is a Python library for fast and scalable Bayesian optimization. It has been developed mainly for application in the basic sciences such as physics and materials…

Computational Physics · Physics 2022-05-26 Yuichi Motoyama , Ryo Tamura , Kazuyoshi Yoshimi , Kei Terayama , Tsuyoshi Ueno , Koji Tsuda

Lithium-ion battery (LIB) sources have played an essential role in self-sustained transportation energy systems and have been widely deployed in the last few years. To realize reliable battery maintenance, identifying its electrochemical…

Systems and Control · Electrical Eng. & Systems 2023-03-15 Yuxuan Gu , Jianxiao Wang , Yuanbo Chen , Kedi Zheng , Zhongwei Deng , Qixin Chen

Physico-chemical continuum battery models are typically parameterized by manual fits, relying on the individual expertise of researchers. In this article, we introduce a computer algorithm that directly utilizes the experience of battery…

Data Analysis, Statistics and Probability · Physics 2023-02-08 Yannick Kuhn , Hannes Wolf , Arnulf Latz , Birger Horstmann

PYROBOCOP is a Python-based package for control, optimization and estimation of robotic systems described by nonlinear Differential Algebraic Equations (DAEs). In particular, the package can handle systems with contacts that are described…

Robotics · Computer Science 2022-03-21 Arvind Raghunathan , Devesh K. Jha , Diego Romeres

Efficient parameter identification of electrochemical models is crucial for accurate monitoring and control of lithium-ion cells. This process becomes challenging when applied to complex models that rely on a considerable number of…

Systems and Control · Electrical Eng. & Systems 2024-05-20 Jianzong Pi , Samuel Filgueira da Silva , Mehmet Fatih Ozkan , Abhishek Gupta , Marcello Canova

In deterministic optimization, it is typically assumed that all problem parameters are fixed and known. In practice, however, some parameters may be a priori unknown but can be estimated from contextual information. A typical…

Optimization and Control · Mathematics 2026-04-21 Bo Tang , Elias B. Khalil

Parameter identification for electrochemical battery models has always been challenging due to the multitude of parameters involved, most of which cannot be directly measured. This paper evaluates the efficiency and optimality of three…

Systems and Control · Electrical Eng. & Systems 2025-11-04 Feng Guo , Luis D. Couto , Guillaume Thenaisie

This work introduces ParAMS -- a versatile Python package that aims to make parameterization workflows in computational chemistry and physics more accessible, transparent and reproducible. We demonstrate how ParAMS facilitates the parameter…

Chemical Physics · Physics 2021-05-18 Leonid Komissarov , Robert Rüger , Matti Hellström , Toon Verstraelen

PyPWA is a toolkit designed to optimize parametric models describing data and generate simulated distributions according to a model. Its software has been written within the python ecosystem with the goal of performing Amplitude or Partial…

Data Analysis, Statistics and Probability · Physics 2023-06-06 Mark Jones , Peter Hurck , William Phelps , Carlos W. Salgado

This paper introduces the design and implementation of PyOptInterface, a modeling language for mathematical optimization embedded in Python programming language. PyOptInterface uses lightweight and compact data structure to bridge…

Mathematical Software · Computer Science 2024-05-17 Yue Yang , Chenhui Lin , Luo Xu , Wenchuan Wu

In this paper, we present an open-source pure-Python library called PyPop7 for black-box optimization (BBO). As population-based methods (e.g., evolutionary algorithms, swarm intelligence, and pattern search) become increasingly popular for…

Neural and Evolutionary Computing · Computer Science 2024-07-08 Qiqi Duan , Guochen Zhou , Chang Shao , Zhuowei Wang , Mingyang Feng , Yuwei Huang , Yajing Tan , Yijun Yang , Qi Zhao , Yuhui Shi
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