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Bayesian optimisation is a powerful method for optimising black-box functions, popular in settings where the true function is expensive to evaluate and no gradient information is available. Bayesian optimisation can improve responses to…

Machine Learning · Computer Science 2025-05-27 Sigrid Passano Hellan , Christopher G. Lucas , Nigel H. Goddard

A major trend in academia and data science is the rapid adoption of Bayesian statistics for data analysis and modeling, leading to the development of probabilistic programming languages (PPL). A PPL provides a framework that allows users to…

Instrumentation and Methods for Astrophysics · Physics 2021-02-15 James. W. Nightingale , Richard G. Hayes , Matthew Griffiths

Parameter tuning in real-world experiments is constrained by the limited evaluation budget available on hardware. The path-following controller studied in this paper reflects a typical situation in nonlinear geometric controller, where…

Robotics · Computer Science 2026-05-28 Zhewen Zheng , Wenjing Cao , Hongkang Yu , Mo Chen , Takashi Suzuki

The formalism of Bayesian model selection provides a very elegant way of ranking different physical models in terms of how compatible they are with a given set of observed data. However, its practical application is often hampered by the…

Cosmology and Nongalactic Astrophysics · Physics 2026-01-19 Nathan Cohen , Jan Hamann , Ameek Malhotra

This paper explores the use of optimization to design multifunctional metamaterials, and proposes a methodology for constructing a design envelope of potential properties. A thermal-mechanical metamaterial, proposed by Ai and Gao (2017), is…

Computational Engineering, Finance, and Science · Computer Science 2020-04-29 Ewan Fong , Sadik L. Omairey , Peter D. Dunning

Lithium-ion battery packs are usually composed of hundreds of cells arranged in series and parallel connections. The proper functioning of these complex devices requires suitable Battery Management Systems (BMSs). Advanced BMSs rely on…

Systems and Control · Electrical Eng. & Systems 2019-09-30 Andrea Pozzi , Marcello Torchio , Richard D. Braatz , Davide M. Raimondo

Numerical software is usually shipped with built-in hyperparameters. By carefully tuning those hyperparameters, significant performance enhancements can be achieved for specific applications. We developed MindOpt Tuner, a new automatic…

Mathematical Software · Computer Science 2023-07-18 Mengyuan Zhang , Wotao Yin , Mengchang Wang , Yangbin Shen , Peng Xiang , You Wu , Liang Zhao , Junqiu Pan , Hu Jiang , KuoLing Huang

To achieve peak predictive performance, hyperparameter optimization (HPO) is a crucial component of machine learning and its applications. Over the last years, the number of efficient algorithms and tools for HPO grew substantially. At the…

We present pomegranate, an open source machine learning package for probabilistic modeling in Python. Probabilistic modeling encompasses a wide range of methods that explicitly describe uncertainty using probability distributions. Three…

Artificial Intelligence · Computer Science 2018-03-01 Jacob Schreiber

Background: The study of genome-scale metabolic models and their underlying networks is one of the most important fields in systems biology. The complexity of these models and their description makes the use of computational tools an…

Molecular Networks · Quantitative Biology 2012-12-03 D. Gamermann , A. Montagud , R. A. Jaime Infante , J. Triana , P. F. de Córdoba , J. F. Urchueguía

The apsis toolkit presented in this paper provides a flexible framework for hyperparameter optimization and includes both random search and a bayesian optimizer. It is implemented in Python and its architecture features adaptability to any…

Machine Learning · Computer Science 2015-03-17 Frederik Diehl , Andreas Jauch

Within the last years, Python became more prominent in the scientific community and is now used for simulations, machine learning, and data analysis. All these tasks profit from additional compute power offered by parallelism and…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-10-26 Andreas Gocht , Robert Schöne , Jan Frenzel

In modern software development, Python third-party libraries play a critical role, especially in fields like deep learning and scientific computing. However, API parameters in these libraries often change during evolution, leading to…

Software Engineering · Computer Science 2025-12-24 Shuai Zhang , Guanping Xiao , Jun Wang , Huashan Lei , Gangqiang He , Yepang Liu , Zheng Zheng

Computer simulation has become one of the most important tools in scientific research in many disciplines. Benefiting from the dynamical trajectories regulated by versatile interatomic interactions, various material properties can be…

Materials Science · Physics 2024-11-28 Y. -C. Hu , J. Tian

We propose a novel Bayesian optimization (BO) procedure aimed at identifying the ``profile optima'' of a deterministic black-box computer simulation that has a single control parameter and multiple nuisance parameters. The profile optima…

Methodology · Statistics 2025-12-30 Courtney Kyger , James Fernandez , John A. Grunenwald , James Braun , Annie Booth

The electric vehicle (EV) battery supply chain will face challenges in sourcing scarce and expensive minerals required for manufacturing and in disposing of hazardous retired batteries. Integrating recycling technology into the supply chain…

Optimization and Control · Mathematics 2025-07-02 Matthew Brun , Xu Andy Sun

An understanding of how input parameter uncertainty in the numerical simulation of physical models leads to simulation output uncertainty is a challenging task. Common methods for quantifying output uncertainty, such as performing a grid or…

Materials Science · Physics 2023-09-25 Samuel G. McCallum , James E. Lerpiniére , Kjeld O. Jensen , Alison B. Walker

We present PyOECP, a Python-based flexible open-source software for estimating and modeling the complex permittivity obtained from the open-ended coaxial probe (OECP) technique. The transformation of the measured reflection coefficient to…

Instrumentation and Detectors · Physics 2021-10-01 Tae Jun Yoon , Katie A. Maerzke , Robert P. Currier , Alp T. Findikoglu

We present PyMoosh, a Python-based simulation library designed to provide a comprehensive set of numerical tools allowing to compute essentially all optical characteristics of multilayered structures, ranging from reflectance and…

Photovoltaic (PV) energy grows at an unprecedented pace, which makes it difficult to maintain up-to-date and accurate PV registries, which are critical for many applications such as PV power generation estimation. This lack of qualitative…

Signal Processing · Electrical Eng. & Systems 2023-09-15 Yann Tremenbert , Gabriel Kasmi , Laurent Dubus , Yves-Marie Saint-Drenan , Philippe Blanc
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