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We present a compartmental SEIRD model aimed at forecasting hospital occupancy in metropolitan areas during the current COVID-19 outbreak. The model features asymptomatic and symptomatic infections with detailed hospital dynamics. We model…

Populations and Evolution · Quantitative Biology 2020-06-08 Marcos A. Capistran , Antonio Capella , J. Andres Christen

When surveillance data of infectious disease incidence (e.g. weekly case counts) are disaggregated by demographic indicators, disparities in long-run health outcomes between these groups become apparent. Accurate identification of high-risk…

Methodology · Statistics 2026-05-29 Miles Moran , Rob Trangucci , Lisa Madsen

Accurate forecasting of Avian Influenza Virus (AIV) outbreaks within wild bird populations necessitates models that account for complex, multi-scale transmission patterns driven by diverse factors. While conventional spatiotemporal epidemic…

Social and Information Networks · Computer Science 2026-02-02 Jing Du , Haley Stone , Yang Yang , Ashna Desai , Hao Xue , Andreas Züfle , Chandini Raina MacIntyre , Flora D. Salim

Advanced epidemic forecasting is critical for enabling precision containment strategies, highlighting its strategic importance for public health security. While recent advances in Large Language Models (LLMs) have demonstrated effectiveness…

Machine Learning · Computer Science 2025-05-20 Chenghua Gong , Rui Sun , Yuhao Zheng , Juyuan Zhang , Tianjun Gu , Liming Pan , Linyuan Lv

Measles is considered as a highly contagious disease that leads to serious complications around the world. Thus, the paper determined the trend and the five-year forecasted data of the Measles in the Philippines. This study utilized the…

Computers and Society · Computer Science 2021-01-06 Hidear Talirongan , Markdy Y. Orong , Florence Jean B. Talirongan

Real-time forecasting of disease outbreaks requires standardized outputs generated in a timely manner. Development of pipelines to automate infectious disease forecasts can ensure that parameterization and software dependencies are common…

Other Quantitative Biology · Quantitative Biology 2022-08-11 VP Nagraj , Chris Hulme-Lowe , Shakeel Jessa , Stephen D. Turner

Big data collected from the Internet possess great potential to reveal the ever-changing trends in society. In particular, accurate infectious disease tracking with Internet data has grown in popularity, providing invaluable information for…

Applications · Statistics 2023-08-22 Shaoyang Ning , Ahmed Hussain , Qing Wang

Early detection of patients vulnerable to infections acquired in the hospital environment is a challenge in current health systems given the impact that such infections have on patient mortality and healthcare costs. This work is focused on…

We consider the problem of forecasting the daily number of hospitalized COVID-19 patients at a single hospital site, in order to help administrators with logistics and planning. We develop several candidate hierarchical Bayesian models…

Compartmental models, especially the Susceptible-Infected-Removed (SIR) model, have long been used to understand the behaviour of various diseases. Allowing parameters, such as the transmission rate, to be time-dependent functions makes it…

Methodology · Statistics 2024-09-27 Son Luu , Edward Susko , Lam Si Tung Ho

A plethora of prediction models of SARS-CoV-2 pandemic were proposed in the past. Prediction performances not only depend on the structure and features of the model, but also on its parametrization. Official databases are often biased due…

Populations and Evolution · Quantitative Biology 2021-09-27 Yuri Kheifetz , Holger Kirsten , Markus Scholz

Mathematical models of cholera and waterborne disease vary widely in their structures, in terms of transmission pathways, loss of immunity, and other features. These differences may yield different predictions and parameter estimates from…

Populations and Evolution · Quantitative Biology 2016-05-24 Elizabeth C. Lee , Michael R. Kelly , Brad M. Ochocki , Segun M. Akinwumi , Karen E. S. Hamre , Joseph H. Tien , Marisa C. Eisenberg

We examine salient trends of influenza pandemics in Australia, a rapidly urbanizing nation. To do so, we implement state-of-the-art influenza transmission and progression models within a large-scale stochastic computer simulation, generated…

As COVID-19 pandemic progresses, severe flu seasons may happen alongside an increase in cases in cases and death of COVID-19, causing severe burdens on health care resources and public safety. A consequence of a twindemic may be a mixture…

Applications · Statistics 2022-02-08 Simin Ma , Shaoyang Ning , Shihao Yang

Accurate and trustworthy epidemic forecasting is an important problem that has impact on public health planning and disease mitigation. Most existing epidemic forecasting models disregard uncertainty quantification, resulting in…

Machine Learning · Computer Science 2021-11-16 Harshavardhan Kamarthi , Lingkai Kong , Alexander Rodríguez , Chao Zhang , B. Aditya Prakash

The seasonal human influenza virus undergoes rapid evolution, leading to significant changes in circulating viral strains from year to year. These changes are typically driven by adaptive mutations, particularly in the antigenic epitopes,…

Populations and Evolution · Quantitative Biology 2024-11-28 Matthijs Meijers , Denis Ruchnewitz , Jan Eberhardt , Malancha Karmakar , Marta Łuksza , Michael Lässig

We perform an analytical sensitivity analysis for a model of a continuous-time branching process evolving on a fixed network. This allows us to determine the relative importance of the model parameters to the growth of the population on the…

Physics and Society · Physics 2015-09-08 Sophie Hautphenne , Gautier Krings , Jean-Charles Delvenne , Vincent D. Blondel

Climate change significantly impacts public health, driving the emergence and spread of epidemics. Climate health models are essential for assessing and predicting disease outbreaks influenced by climatic variables like temperature and…

The threat of avian influenza and the 2004-2005 influenza vaccine supply shortage in the United States has sparked a debate about optimal vaccination strategies to reduce the burden of morbidity and mortality caused by the influenza virus.…

Populations and Evolution · Quantitative Biology 2010-02-10 Shweta Bansal , Babak Pourbohloul , Lauren Ancel Meyers

A prompt public health response to a new epidemic relies on the ability to monitor and predict its evolution in real time as data accumulate. The 2009 A/H1N1 outbreak in the UK revealed pandemic data as noisy, contaminated, potentially…