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We propose a new supervised dimensionality reduction technique called Supervised Linear Centroid-Encoder (SLCE), a linear counterpart of the nonlinear Centroid-Encoder (CE) \citep{ghosh2022supervised}. SLCE works by mapping the samples of a…

Machine Learning · Computer Science 2023-06-08 Tomojit Ghosh , Michael Kirby

The emergence of scanning probe and electron beam imaging techniques have allowed quantitative studies of atomic structure and minute details of electronic and vibrational structure on the level of individual atomic units. These microscopic…

Statistical Mechanics · Physics 2020-01-22 Sai Mani Prudhvi Valleti , Lukas Vlcek , Maxim Ziatdinov , Rama K. Vasudevan , Sergei V. Kalinin

We image local structural rearrangements in soft colloidal glasses under small periodic perturbations induced by thermal cycling. Local structural entropy $S_{2}$ positively correlates with observed rearrangements in colloidal glasses. The…

Soft Condensed Matter · Physics 2016-06-13 Xiunan Yang , Rui Liu , Mingcheng Yang , Wei-Hua Wang , Ke Chen

A unified thermodynamic algorithm (UTA) is presented for constructing thermodynamically consistent dynamical systems, i.e., systems that have Hamiltonian and dissipative parts that conserve energy while producing entropy. The algorithm is…

Fluid Dynamics · Physics 2025-01-27 Azeddine Zaidni , Philip J. Morrison

Standard supervised learning optimizes for predictive accuracy but remains agnostic to the internal geometry of learned features, often yielding representations that are entangled and brittle. We propose Class-Conditional Activation…

Machine Learning · Computer Science 2026-04-21 Akash Samanta , Manish Pratap Singh , Debasis Chaudhuri

We are concerned with the inverse scattering problem of extracting the geometric structures of an unknown/inaccessible inhomogeneous medium by using the corresponding acoustic far-field measurement. Using the intrinsic geometric properties…

Analysis of PDEs · Mathematics 2017-06-15 Jingzhi Li , Xiaofei Li , Hongyu Liu

We revisit the concept of constraint embedding as a means for dealing with kinematic loop constraints during dynamics computations for rigid-body systems. Specifically, we consider the local loop constraints emerging from common actuation…

Robotics · Computer Science 2024-10-24 Matthew Chignoli , Nicholas Adrian , Sangbae Kim , Patrick M. Wensing

While Transformer architectures have demonstrated impressive scalability across domains, they continue to face challenges in long-context reasoning, computational efficiency, and structural generalization - largely due to rigid layer…

Computation and Language · Computer Science 2025-10-03 Haochen You , Baojing Liu

In this paper, we present a cluster algorithm for the simulation of hard spheres and related systems. In this algorithm, a copy of the configuration is rotated with respect to a randomly chosen pivot point. The two systems are then…

Statistical Mechanics · Physics 2008-02-03 Christophe Dress , Werner Krauth

To obtain explicit understanding of the behavior of dynamical systems, geometrical methods and slow-fast analysis have proved to be highly useful. Such methods are standard for smooth dynamical systems, and increasingly used for continuous,…

Quantitative Methods · Quantitative Biology 2023-10-19 Francesco Montefusco , Morten Gram Pedersen

In the realm of big data, discerning patterns in nonlinear systems affected by external control inputs is increasingly challenging. Our approach blends the coarse-graining strengths of centroid-based unsupervised clustering with the clarity…

Fluid Dynamics · Physics 2023-12-25 Nitish Arya , Aditya G. Nair

We consider the dynamics of strongly localized systems subject to dephasing noise with arbitrary correlation time. Although noise inevitably induces delocalization, transport in the noise-induced delocalized phase is subdiffusive in a…

Disordered Systems and Neural Networks · Physics 2017-07-28 Sarang Gopalakrishnan , K. Ranjibul Islam , Michael Knap

We describe the Bayesian BARCODE formalism that has been designed towards the reconstruction of the Cosmic Web in a given volume on the basis of the sampled galaxy cluster distribution. Based on the realization that the massive compact…

Cosmology and Nongalactic Astrophysics · Physics 2017-03-15 E. G. Patrick Bos , Rien van de Weygaert , Francisco Kitaura , Marius Cautun

This article studies two particular algorithms, a Relaxation Least Squares (RLS) algorithm and a Relaxation Newton Iteration (RNI) scheme , for reconstructing unknown parameters in dissipative dynamical systems. Both algorithms are based on…

Dynamical Systems · Mathematics 2024-08-27 Vincent R. Martinez , Jacob Murri , Jared P. Whitehead

Soft colloids allow to explore high density states well beyond random close packing. An important open question is whether softness controls the dynamics under these dense conditions. While experimental works reported conflicting results,…

Soft Condensed Matter · Physics 2021-06-08 Nicoletta Gnan , Emanuela Zaccarelli

A new scheme of first-principles computation for strongly correlated electron systems is proposed. This scheme starts from the local-density approximation (LDA) at high-energy band structure, while the low-energy effective Hamiltonian is…

Materials Science · Physics 2007-05-23 Yoshiki Imai , Igor V. Solovyev , Masatoshi Imada

A feature-mapping framework for inverse reconstruction of density-based topology optimization results is proposed. Unlike SIMP, whose voxelized outputs are hard to interpret or reuse, the method represents designs with high-level geometric…

Optimization and Control · Mathematics 2026-02-16 Patrick Jung

We generalize the force-level Nonlinear Langevin Equation theory of single particle hopping to include collective effects associated with long range elastic distortion of the liquid. The activated alpha relaxation event is of a mixed…

Disordered Systems and Neural Networks · Physics 2015-06-18 Stephen Mirigian , Kenneth S. Schweizer

Interpolating scattered CFD datasets onto a uniform Cartesian grid can distort the true geometry, producing a convex-hull type envelope and activating nonphysical regions. This work presents a reconstruction framework that recovers…

Fluid Dynamics · Physics 2026-02-18 Mehran Sharifi , Gorka S. Larraona , Alejandro Rivas

Besides their huge technological importance, fluidized beds have attracted a large amount of research because they are perfect playgrounds to investigate highly dynamic particulate flows. Their over-all behavior is determined by…

Soft Condensed Matter · Physics 2017-06-20 T. Lichtenegger , S. Pirker