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We analyse structure and dynamics in simulated high-concentration hard sphere colloidal suspensions by means of calculations based on the void space. We show that remoteness, a quantity measuring the scale of spaces, is useful in studying…

Soft Condensed Matter · Physics 2007-05-23 M. D. Haw

Modeling the full-range deformation behaviors of materials under complex loading and materials conditions is a significant challenge for constitutive relations (CRs) modeling. We propose a general encoder-decoder deep learning framework…

Materials Science · Physics 2023-04-04 Qing-Jie Li , Mahmut Nedim Cinbiz , Yin Zhang , Qi He , Geoffrey Beausoleil , Ju Li

Schemas -- abstract relational structures that capture the commonalities across experiences -- are thought to underlie humans' and animals' ability to rapidly generalize knowledge, rebind new experiences to existing structures, and flexibly…

Neurons and Cognition · Quantitative Biology 2026-03-17 Toon Van de Maele , Tim Verbelen , Dileep George , Giovanni Pezzulo

Interpretable scientific machine learning often trades predictive performance for structural transparency. When physical targets arise from hierarchical and nonlinear descriptor entanglement, weakly interacting white-box models underfit,…

Materials Science · Physics 2026-03-30 Seong-Hoon Jang

To exploit both memory locality and the full performance potential of highly tuned kernels, dense linear algebra libraries such as LAPACK commonly implement operations as blocked algorithms. However, to achieve next-to-optimal performance…

Mathematical Software · Computer Science 2022-04-08 Elmar Peise , Paolo Bientinesi

Topological defects in active polar fluids exhibit complex dynamics driven by internally generated stresses, reflecting the deep interplay between topology, flow, and non-equilibrium hydrodynamics. Feedback control offers a powerful means…

Soft Condensed Matter · Physics 2025-07-28 Abhinav Singh , Petros Koumoutsakos

When two bodies get into contact, only a small portion of the apparent area is actually involved in producing contact and friction forces, because of the surface roughnesses. It is therefore crucial to accurately describe the morphology of…

Numerical Analysis · Mathematics 2024-11-19 Mahmoud Shaqfa , Gary P. T. Choi , Guillaume Anciaux , Katrin Beyer

The inherent structure approach, wherein thermodynamic and structural changes in glass forming liquids are analyzed in terms of local potential energy minima that the liquid samples, has recently been applied extensively to the study of…

Statistical Mechanics · Physics 2007-05-23 Srikanth Sastry

Finding proper collective variables for complex systems and processes is one of the most challenging tasks in simulations, which limits the interpretation of experimental and simulated data and the application of enhanced sampling…

Dense suspensions of particles dispersed in liquids are central to industrial and geophysical processes and serve as model systems for out-of-equilibrium soft matter. At high particle concentrations, they exhibit stress-dependent rheology,…

Soft Condensed Matter · Physics 2026-03-16 Orhun Ayar , Bhargav Sriram Siddani , Ishan Srivastava , Abhinendra Singh

Temperature monitoring during the life time of heat source components in engineering systems becomes essential to guarantee the normal work and the working life of these components. However, prior methods, which mainly use the interpolate…

Machine Learning · Computer Science 2022-12-27 Zhiqiang Gong , Weien Zhou , Jun Zhang , Wei Peng , Wen Yao

An optomechanical oscillator undergoes a Hopf bifurcation that connects two dynamical regimes with different information-processing capabilities: thermal Brownian motion and coherent self-sustained oscillation. Below threshold, the…

Biomolecular condensates help organize the cell cytoplasm and nucleoplasm into spatial compartments with different chemical compositions. A key feature of such compositional patterning is the local enrichment of enzymatically active…

Biological Physics · Physics 2024-08-06 Andriy Goychuk , Leonardo Demarchi , Ivan Maryshev , Erwin Frey

Harmonic decomposition of surfaces, such as spherical and spheroidal harmonics, is used to analyze morphology, reconstruct, and generate surface inclusions of particulate microstructures. However, obtaining high-quality meshes of…

Graphics · Computer Science 2025-12-08 Mahmoud Shaqfa

A recently developed high-order implicit shock tracking (HOIST) framework for resolving discontinuous solutions of inviscid, steady conservation laws [41, 43] is extended to the unsteady case. Central to the framework is an optimization…

Numerical Analysis · Mathematics 2022-01-26 Andrew Shi , Per-Olof Persson , Matthew Zahr

Stable traversal over geometrically complex terrain increasingly requires exteroceptive perception, yet prior perceptive humanoid locomotion methods often remain tied to explicit geometric abstractions, either by mediating control through…

Robotics · Computer Science 2026-04-02 Yuan Hao , Ruiqi Yu , Shixin Luo , Guoteng Zhang , Jun Wu , Qiuguo Zhu

Many biological tissues feature a heterogeneous network of fibers whose tensile and bending rigidity contribute substantially to these tissues' elastic properties. Rigidity percolation has emerged as a important paradigm for relating these…

The transition of a fluid to a rigid glass upon cooling is a common route of transformation from liquid to solid that embodies the most poorly understood features of both phases1,2,3. From the liquid perspective, the puzzle is to understand…

Soft Condensed Matter · Physics 2009-01-23 Asaph Widmer-Cooper , Heidi Perry , Peter Harrowell , David R. Reichman

We elaborate on a general method that we recently introduced for characterizing the "natural" structures in complex physical systems via a multiscale network based approach for the data mining of such structures. The approach is based on…

Materials Science · Physics 2015-03-18 P. Ronhovde , S. Chakrabarty , D. Hu , M. Sahu , K. F. Kelton , N. A. Mauro , K . K. Sahu , Z. Nussinov

A computational approach by an implementation of the Principle Component Analysis (PCA) with K-means and Gaussian Mixture (GM) clustering methods from Machine Learning (ML) algorithms to identify structural and dynamical heterogeneities of…

Statistical Mechanics · Physics 2023-09-01 Viet Nguyen , Xueyu Song