English
Related papers

Related papers: RingFormer: A Ring-Enhanced Graph Transformer for …

200 papers

The Transformer architecture has become a dominant choice in many domains, such as natural language processing and computer vision. Yet, it has not achieved competitive performance on popular leaderboards of graph-level prediction compared…

Machine Learning · Computer Science 2021-11-25 Chengxuan Ying , Tianle Cai , Shengjie Luo , Shuxin Zheng , Guolin Ke , Di He , Yanming Shen , Tie-Yan Liu

Semantic segmentation usually benefits from global contexts, fine localisation information, multi-scale features, etc. To advance Transformer-based segmenters with these aspects, we present a simple yet powerful semantic segmentation…

Computer Vision and Pattern Recognition · Computer Science 2022-12-07 Lihua Fu , Haoyue Tian , Xiangping Bryce Zhai , Pan Gao , Xiaojiang Peng

The task of radio map estimation aims to generate a dense representation of electromagnetic spectrum quantities, such as the received signal strength at each grid point within a geographic region, based on measurements from a subset of…

Computer Vision and Pattern Recognition · Computer Science 2025-04-30 Zheng Fang , Kangjun Liu , Ke Chen , Qingyu Liu , Jianguo Zhang , Lingyang Song , Yaowei Wang

Determining protein structures at an atomic level remains a significant challenge in structural biology. We introduce $\texttt{RecCrysFormer}$, a hybrid model that exploits the strengths of transformers with the aim of integrating…

Quantitative Methods · Quantitative Biology 2026-01-30 Tom Pan , Evan Dramko , Mitchell D. Miller , George N. Phillips , Anastasios Kyrillidis

As climate change intensifies, the global imperative to shift towards sustainable energy sources becomes more pronounced. Photovoltaic (PV) energy is a favored choice due to its reliability and ease of installation. Accurate mapping of PV…

Computer Vision and Pattern Recognition · Computer Science 2023-11-01 Adrian de Luis , Minh Tran , Taisei Hanyu , Anh Tran , Liao Haitao , Roy McCann , Alan Mantooth , Ying Huang , Ngan Le

The recent development of multimodal single-cell technology has made the possibility of acquiring multiple omics data from individual cells, thereby enabling a deeper understanding of cellular states and dynamics. Nevertheless, the…

Genomics · Quantitative Biology 2023-10-16 Wenzhuo Tang , Hongzhi Wen , Renming Liu , Jiayuan Ding , Wei Jin , Yuying Xie , Hui Liu , Jiliang Tang

This work presents a set of optimal machine learning (ML) models to represent the temporal degradation suffered by the power conversion efficiency (PCE) of polymeric organic solar cells (OSCs) with a multilayer structure…

Material representations that are compatible with machine learning models play a key role in developing models that exhibit high accuracy for property prediction. Atomic orbital interactions are one of the important factors that govern the…

Fraud detection remains a challenging task due to the complex and deceptive nature of fraudulent activities. Current approaches primarily concentrate on learning only one perspective of the graph: either the topological structure of the…

Machine Learning · Computer Science 2025-02-12 Haolin Li , Shuyang Jiang , Lifeng Zhang , Siyuan Du , Guangnan Ye , Hongfeng Chai

Graph Transformers (GTs) have demonstrated great effectiveness across various graph analytical tasks. However, the existing GTs focus on training and testing graph data originated from the same distribution, but fail to generalize under…

Machine Learning · Computer Science 2026-03-16 Tianyin Liao , Ziwei Zhang , Yufei Sun , Chunyu Hu , Jianxin Li

Motivation: Molecular interaction networks summarize complex biological processes as graphs, whose structure is informative of biological function at multiple scales. Simultaneously, omics technologies measure the variation or activity of…

Quantitative Methods · Quantitative Biology 2020-12-24 Ramin Hasibi , Tom Michoel

Generating a novel and optimized molecule with desired chemical properties is an essential part of the drug discovery process. Failure to meet one of the required properties can frequently lead to failure in a clinical test which is costly.…

Machine Learning · Computer Science 2020-10-28 Bonggun Shin , Sungsoo Park , JinYeong Bak , Joyce C. Ho

Background and objective: High-resolution radiographic images play a pivotal role in the early diagnosis and treatment of skeletal muscle-related diseases. It is promising to enhance image quality by introducing single-image…

Image and Video Processing · Electrical Eng. & Systems 2023-12-29 Yongsong Huang , Tomo Miyazaki , Xiaofeng Liu , Kaiyuan Jiang , Zhengmi Tang , Shinichiro Omachi

Change detection in remote sensing imagery is essential for a variety of applications such as urban planning, disaster management, and climate research. However, existing methods for identifying semantically changed areas overlook the…

Computer Vision and Pattern Recognition · Computer Science 2023-12-08 Maximilian Bernhard , Niklas Strauß , Matthias Schubert

Transformers have become methods of choice in many applications thanks to their ability to represent complex interactions between elements. However, extending the Transformer architecture to non-sequential data such as molecules and…

Machine Learning · Computer Science 2022-04-27 Yoni Choukroun , Lior Wolf

While transformers demonstrate outstanding performance across various audio tasks, their application to neural vocoders remains challenging. Neural vocoders require the generation of long audio signals at the sample level, which demands…

Sound · Computer Science 2025-12-30 Seongho Hong , Yong-Hoon Choi

Carbon dioxide (CO$_2$) emissions are critical indicators of both environmental impact and various industrial processes, including livestock management. We introduce CarboFormer, a lightweight semantic segmentation framework for Optical Gas…

Computer Vision and Pattern Recognition · Computer Science 2026-05-26 Taminul Islam , Toqi Tahamid Sarker , Mohamed G Embaby , Khaled R Ahmed , Amer AbuGhazaleh

We present a new table structure recognition (TSR) approach, called TSRFormer, to robustly recognizing the structures of complex tables with geometrical distortions from various table images. Unlike previous methods, we formulate table…

Computer Vision and Pattern Recognition · Computer Science 2022-08-10 Weihong Lin , Zheng Sun , Chixiang Ma , Mingze Li , Jiawei Wang , Lei Sun , Qiang Huo

Neural methods of molecule property prediction require efficient encoding of structure and property relationship to be accurate. Recent work using graph algorithms shows limited generalization in the latent molecule encoding space. We build…

Quantitative Methods · Quantitative Biology 2020-11-26 Prateeth Nayak , Andrew Silberfarb , Ran Chen , Tulay Muezzinoglu , John Byrnes

To alleviate the local receptive issue of GCN, Transformers have been exploited to capture the long range dependences of nodes for graph data representation and learning. However, existing graph Transformers generally employ regular…

Machine Learning · Computer Science 2023-05-15 Bo Jiang , Fei Xu , Ziyan Zhang , Jin Tang , Feiping Nie