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Language models (LMs) built upon deep neural networks (DNNs) have recently demonstrated breakthrough effectiveness in software engineering tasks such as code generation, completion, and repair. This has paved the way for the emergence of…

Software Engineering · Computer Science 2025-01-06 Jingzhi Gong , Vardan Voskanyan , Paul Brookes , Fan Wu , Wei Jie , Jie Xu , Rafail Giavrimis , Mike Basios , Leslie Kanthan , Zheng Wang

Motivation: Deep learning architectures have recently demonstrated their power in predicting DNA- and RNA-binding specificities. Existing methods fall into three classes: Some are based on Convolutional Neural Networks (CNNs), others use…

Machine Learning · Computer Science 2019-01-31 Ameni Trabelsi , Mohamed Chaabane , Asa Ben Hur

The proliferation of open-sourced Large Language Models (LLMs) and diverse downstream tasks necessitates efficient model selection, given the impracticality of fine-tuning all candidates due to computational constraints. Despite the recent…

Machine Learning · Computer Science 2025-06-03 Xinyue Zeng , Haohui Wang , Junhong Lin , Jun Wu , Tyler Cody , Dawei Zhou

Large language models have emerged as a promising approach towards achieving general-purpose AI agents. The thriving open-source LLM community has greatly accelerated the development of agents that support human-machine dialogue interaction…

Computer Vision and Pattern Recognition · Computer Science 2023-11-07 Zhenfei Yin , Jiong Wang , Jianjian Cao , Zhelun Shi , Dingning Liu , Mukai Li , Lu Sheng , Lei Bai , Xiaoshui Huang , Zhiyong Wang , Jing Shao , Wanli Ouyang

Recent advancements in large language models (LLMs) have shown significant potential for automating hardware description language (HDL) code generation from high-level natural language instructions. While fine-tuning has improved LLMs'…

Hardware Architecture · Computer Science 2025-02-27 Yi Liu , Changran Xu , Yunhao Zhou , Zeju Li , Qiang Xu

Research on long non-coding RNAs (lncRNAs) has garnered significant attention due to their critical roles in gene regulation and disease mechanisms. However, the complexity and diversity of lncRNA sequences, along with the limited knowledge…

Genomics · Quantitative Biology 2024-11-07 Wei Wang , Zhichao Hou , Xiaorui Liu , Xinxia Peng

Large language models (LLMs) have revolutionized many areas (e.g. natural language processing, software engineering, etc.) by achieving state-of-the-art performance on extensive downstream tasks. Aiming to achieve robust and general…

Artificial Intelligence · Computer Science 2024-01-18 Zhiming Li , Yushi Cao , Xiufeng Xu , Junzhe Jiang , Xu Liu , Yon Shin Teo , Shang-wei Lin , Yang Liu

The rapid rise in popularity of Large Language Models (LLMs) with emerging capabilities has spurred public curiosity to evaluate and compare different LLMs, leading many researchers to propose their own LLM benchmarks. Noticing preliminary…

Artificial Intelligence · Computer Science 2025-05-15 Timothy R. McIntosh , Teo Susnjak , Nalin Arachchilage , Tong Liu , Paul Watters , Malka N. Halgamuge

Reasoning has emerged as the next major frontier for language models (LMs), with rapid advances from both academic and industrial labs. However, this progress often outpaces methodological rigor, with many evaluations relying on…

Machine Learning · Computer Science 2025-10-08 Andreas Hochlehnert , Hardik Bhatnagar , Vishaal Udandarao , Samuel Albanie , Ameya Prabhu , Matthias Bethge

The diversity of human language, shaped by social, cultural, and regional influences, presents significant challenges for natural language processing (NLP) systems. Existing benchmarks often overlook intra-language variations, leaving…

Computation and Language · Computer Science 2025-04-11 Abhay Gupta , Jacob Cheung , Philip Meng , Shayan Sayyed , Austen Liao , Kevin Zhu , Sean O'Brien

Routing large language models (LLMs) is a new paradigm that uses a router to recommend the best LLM from a pool of candidates for a given input. In this paper, our comprehensive analysis with more than 8,500 LLMs reveals a novel model-level…

Computation and Language · Computer Science 2025-05-21 Zhongzhan Huang , Guoming Ling , Yupei Lin , Yandong Chen , Shanshan Zhong , Hefeng Wu , Liang Lin

Deep reinforcement learning (DRL) has become a dominant deep-learning paradigm for tasks where complex policies are learned within reactive systems. Unfortunately, these policies are known to be susceptible to bugs. Despite significant…

Robotics · Computer Science 2023-01-12 Guy Amir , Davide Corsi , Raz Yerushalmi , Luca Marzari , David Harel , Alessandro Farinelli , Guy Katz

Multi-modal Large Language Models (MLLMs) are increasingly prominent in the field of artificial intelligence. These models not only excel in traditional vision-language tasks but also demonstrate impressive performance in contemporary…

Computer Vision and Pattern Recognition · Computer Science 2023-12-06 Xiaotian Han , Quanzeng You , Yongfei Liu , Wentao Chen , Huangjie Zheng , Khalil Mrini , Xudong Lin , Yiqi Wang , Bohan Zhai , Jianbo Yuan , Heng Wang , Hongxia Yang

Recent advancements in large language models (LLMs) have shown promising results in multilingual translation even with limited bilingual supervision. The major challenges are catastrophic forgetting and parameter interference for finetuning…

Computation and Language · Computer Science 2024-10-01 Shaolin Zhu , Leiyu Pan , Bo Li , Deyi Xiong

Language models, especially transformer-based ones, have achieved colossal success in NLP. To be precise, studies like BERT for NLU and works like GPT-3 for NLG are very important. If we consider DNA sequences as a text written with an…

Genomics · Quantitative Biology 2026-01-21 Musa Nuri Ihtiyar , Arzucan Ozgur

Foundational deep learning (DL) models are general models, trained on large, diverse, and unlabelled datasets, typically using self-supervised learning techniques have led to significant advancements especially in natural language…

Signal Processing · Electrical Eng. & Systems 2024-11-18 Ahmed Aboulfotouh , Ashkan Eshaghbeigi , Dimitrios Karslidis , Hatem Abou-Zeid

Evaluating large language models (LLMs) today rests on fixed benchmarks that apply the same set of items to any model, producing ceiling and floor effects that mask capability gaps. We argue that the most informative evaluation signal lies…

Artificial Intelligence · Computer Science 2026-05-27 Haoxiang Wang , Da Yu , Huishuai Zhang

Large language models (LLMs) are deployed on increasingly complex tasks that require multi-step decision-making. Understanding their algorithmic reasoning abilities is therefore crucial. However, we lack a diagnostic benchmark for…

Machine Learning · Computer Science 2026-02-12 Yu He , Yingxi Li , Colin White , Ellen Vitercik

Causal reasoning capabilities are essential for large language models (LLMs) in a wide range of applications, such as education and healthcare. But there is still a lack of benchmarks for a better understanding of such capabilities. Current…

Computation and Language · Computer Science 2024-12-25 Ruibo Tu , Hedvig Kjellström , Gustav Eje Henter , Cheng Zhang

Test-time scaling for code generation commonly relies on Best-of-N selection, in which multiple candidate solutions are sampled from a base model, and the best one is selected by an LLM judge. However, training reliable LLM judges is…

Machine Learning · Computer Science 2026-02-02 Peijia Qin , Ruiyi Zhang , Qi Cao , Pengtao Xie