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The growing demands on GPU memory posed by the increasing number of neural network parameters call for training approaches that are more memory-efficient. Previous memory reduction training techniques, such as Low-Rank Adaptation (LoRA) and…

Machine Learning · Computer Science 2025-08-14 Jialin Zhao , Yingtao Zhang , Xinghang Li , Huaping Liu , Carlo Vittorio Cannistraci

The development of single-cell and spatial transcriptomics has revolutionized our capacity to investigate cellular properties, functions, and interactions in both cellular and spatial contexts. However, the analysis of single-cell and…

Genomics · Quantitative Biology 2024-12-09 Shuang Ge , Shuqing Sun , Huan Xu , Qiang Cheng , Zhixiang Ren

Spatial Transformer Networks (STNs) estimate image transformations that can improve downstream tasks by `zooming in' on relevant regions in an image. However, STNs are hard to train and sensitive to mis-predictions of transformations. To…

Machine Learning · Computer Science 2022-06-16 Pola Schwöbel , Frederik Warburg , Martin Jørgensen , Kristoffer H. Madsen , Søren Hauberg

The technology to generate Spatially Resolved Transcriptomics (SRT) data is rapidly being improved and applied to investigate a variety of biological tissues. The ability to interrogate how spatially localised gene expression can lend new…

Quantitative Methods · Quantitative Biology 2021-08-04 Natalie Charitakis , Mirana Ramialison , Hieu T. Nim

Unsupervised domain adaptation (UDA) has achieved unprecedented success in improving the cross-domain robustness of object detection models. However, existing UDA methods largely ignore the instantaneous data distribution during model…

Computer Vision and Pattern Recognition · Computer Science 2020-03-24 Zongxian Li , Qixiang Ye , Chong Zhang , Jingjing Liu , Shijian Lu , Yonghong Tian

Can we use sparse tokens for dense prediction, e.g., segmentation? Although token sparsification has been applied to Vision Transformers (ViT) to accelerate classification, it is still unknown how to perform segmentation from sparse tokens.…

Computer Vision and Pattern Recognition · Computer Science 2023-03-14 Lei Zhou , Huidong Liu , Joseph Bae , Junjun He , Dimitris Samaras , Prateek Prasanna

Emerging unsupervised implicit neural representation (INR) methods, such as NeRP, NeAT, and SCOPE, have shown great potential to address sparse-view computed tomography (SVCT) inverse problems. Although these INR-based methods perform well…

Image and Video Processing · Electrical Eng. & Systems 2025-02-11 Xuanyu Tian , Lixuan Chen , Qing Wu , Chenhe Du , Jingjing Shi , Hongjiang Wei , Yuyao Zhang

In recent years, there has been a rapid development of spatio-temporal prediction techniques in response to the increasing demands of traffic management and travel planning. While advanced end-to-end models have achieved notable success in…

Machine Learning · Computer Science 2023-11-09 Zhonghang Li , Lianghao Xia , Yong Xu , Chao Huang

Recent advances in deep learning-based medical image segmentation studies achieve nearly human-level performance in fully supervised manner. However, acquiring pixel-level expert annotations is extremely expensive and laborious in medical…

Computer Vision and Pattern Recognition · Computer Science 2023-05-19 Hyungseob Shin , Hyeongyu Kim , Sewon Kim , Yohan Jun , Taejoon Eo , Dosik Hwang

The advent of next-generation sequencing-based spatially resolved transcriptomics (SRT) techniques has reshaped genomic studies by enabling high-throughput gene expression profiling while preserving spatial and morphological context.…

Applications · Statistics 2025-02-20 Bencong Zhu , Alberto Cassese , Marina Vannucci , Michele Guindani , Qiwei Li

Pre-trained deep image representations are useful for post-training tasks such as classification through transfer learning, image retrieval, and object detection. Data augmentations are a crucial aspect of pre-training robust…

Computer Vision and Pattern Recognition · Computer Science 2023-02-23 Sangnie Bhardwaj , Willie McClinton , Tongzhou Wang , Guillaume Lajoie , Chen Sun , Phillip Isola , Dilip Krishnan

There are a large number of methods for solving under-determined linear inverse problem. Many of them have very high time complexity for large datasets. We propose a new method called Two-Stage Sparse Representation (TSSR) to tackle this…

Computer Vision and Pattern Recognition · Computer Science 2015-12-09 Chengyu Peng , Hong Cheng , Manchor Ko

In this work, we investigate the use of spatio-temporalImplicit Neural Representations (INRs) for dynamic X-ray computed tomography (XCT) reconstruction under interlaced acquisition schemes. The proposed approach combines ADMM-based…

Image and Video Processing · Electrical Eng. & Systems 2025-10-13 Mathias Boulanger , Ericmoore Jossou

In image segmentation, there is often more than one plausible solution for a given input. In medical imaging, for example, experts will often disagree about the exact location of object boundaries. Estimating this inherent uncertainty and…

Computer Vision and Pattern Recognition · Computer Science 2020-12-23 Miguel Monteiro , Loïc Le Folgoc , Daniel Coelho de Castro , Nick Pawlowski , Bernardo Marques , Konstantinos Kamnitsas , Mark van der Wilk , Ben Glocker

Dimensionality reduction (DR) methods have attracted extensive attention to provide discriminative information and reduce the computational burden of the hyperspectral image (HSI) classification. However, the DR methods face many challenges…

Computer Vision and Pattern Recognition · Computer Science 2018-12-20 Ramanarayan Mohanty , S L Happy , Aurobinda Routray

In this paper, we present a statistical beamforming algorithm as a pre-processing step for robust automatic speech recognition (ASR). By modeling the target speech as a non-stationary Laplacian distribution, a mask-based statistical…

Audio and Speech Processing · Electrical Eng. & Systems 2024-01-08 Ui-Hyeop Shin , Hyung-Min Park

Cancer pathological analysis requires modeling tumor heterogeneity across multiple modalities, primarily through transcriptomics and whole slide imaging (WSI), along with their spatial relations. On one hand, bulk transcriptomics and WSI…

Machine Learning · Computer Science 2026-03-17 Jingkun Yu , Guangkai Shang , Changtao Li , Xun Gong , Tianrui Li , Yazhou He , Zhipeng Luo

Deep learning has proven to successfully learn variations in tissue and cell morphology. Training of such models typically relies on expensive manual annotations. Here we conjecture that spatially resolved gene expression, e.i., the…

Quantitative Methods · Quantitative Biology 2023-12-11 Axel Andersson , Gabriele Partel , Leslie Solorzano , Carolina Wählby

Purpose: Accurate 3D MRI-ultrasound (US) deformable registration is critical for real-time guidance in high-dose-rate (HDR) prostate brachytherapy. We present a weakly supervised spatial implicit neural representation (SINR) method to…

Medical Physics · Physics 2025-03-19 Jing Wang , Ruirui Liu , Yu Lei , Michael J. Baine , Tian Liu , Yang Lei

In this paper, we present a new approach for model acceleration by exploiting spatial sparsity in visual data. We observe that the final prediction in vision Transformers is only based on a subset of the most informative tokens, which is…

Computer Vision and Pattern Recognition · Computer Science 2023-06-05 Yongming Rao , Zuyan Liu , Wenliang Zhao , Jie Zhou , Jiwen Lu