Related papers: Toric Multivariate Gaussian Models from Symmetries…
Previous work of Chan--Church--Grochow and Baker--Wang shows that the set of spanning trees in a plane graph $G$ is naturally a torsor for the Jacobian group of $G$. Informally, this means that the set of spanning trees of $G$ naturally…
We study the Berkovich analytification of the space of genus $0$ logarithmic stable maps to a toric variety $X$ and present applications to both algebraic and tropical geometry. On algebraic side, insights from tropical geometry give two…
We revisit the representation theory in type $A$used previously to establish that the dissimilarity vectors of phylogenetic trees are points on the tropical Grassmannian variety. We use a different version of this construction to show that…
We study Gr\"obner degenerations of Schubert varieties inside flag varieties. We consider toric degenerations of flag varieties induced by matching fields and semi-standard Young tableaux. We describe an analogue of matching field ideals…
We use techniques from Gromov-Witten theory to construct new invariants of matroids taking value in the Chow groups of spaces of rational curves in the permutohedral toric variety. When the matroid is realizable by a complex hyperplane…
Ultrametric matrices are a class of covariance matrices that arise in latent tree models. As a parameter space in a statistical model, the set of ultrametric matrices is neither convex nor a smooth manifold. Focus in the literature has…
In a previous paper, we announced a formula to compute Gromov-Witten and Welschinger invariants of some toric varieties, in terms of combinatorial objects called floor diagrams. We give here detailed proofs in the tropical geometry…
A graph-theoretic method, simpler than existing ones, is used to characterize the minimal set of monomial generators for the integral closure of any algebra of polynomials generated by quadratic monomials. The toric ideal of relations…
We study toric degenerations of opposite Schubert and Richardson varieties inside degenerations of Grassmannians and flag varieties. These degenerations are parametrized by matching fields in the sense of Sturmfels and Zelevinsky. We…
We define phylogenetic projective toric model of a trivalent graph as a generalization of a binary symmetric model of a trivalent phylogenetic tree. Generators of the pro- jective coordinate ring of the models of graphs with one cycle are…
We construct an explicit basis for the coordinate ring of the Bott-Samelson variety Z_i associated to G = GL(n) and an arbitrary sequence of simple reflections i. Our basis is parametrized by certain standard tableaux and generalizes the…
We continue the study of token sliding reconfiguration graphs of independent sets initiated by the authors in an earlier paper (arXiv:2203.16861). Two of the topics in that paper were to study which graphs $G$ are token sliding graphs and…
This article explores to which extent the algebro-geometric theory of rational descendant Gromov-Witten invariants can be carried over to the tropical world. Despite the fact that the tropical moduli-spaces we work with are non-compact, the…
We propose an effective algorithm that decides if a prime ideal in a polynomial ring over the complex numbers can be transformed into a toric ideal by a linear automorphism of the ambient space. If this is the case, the algorithm computes…
We introduce a class of Markov coalescent processes on the continuous $d$-dimensional torus, in the most general setting of simultaneous multiple mergers, called the Brownian spatial coalescent. It is axiomatically defined through a…
Consider jointly Gaussian random variables whose conditional independence structure is specified by a graphical model. If we observe realizations of the variables, we can compute the covariance matrix, and it is well known that the support…
We consider the set of forms of a toric variety over an arbitrary field: those varieties which become isomorphic to a toric variety after base field extension. In contrast to most previous work, we also consider arbitrary isomorphisms…
The toric code can be constructed as a gauge theory of finite groups on oriented two dimensional lattices. Here we construct analogous models with the gauge fields belonging to groupoids, which are categories where every morphism has an…
Let G(d,n) denote the Grassmannian of d-planes in C^n and let T be the torus (C^*)^n/diag(C^*) which acts on G(d,n). Let x be a point of G(d,n) and let \bar{Tx} be the closure of the T-orbit through x. Then the class of the structure sheaf…
Lateral gene transfer (LGT) is a common mechanism of non-vertical evolution where genetic material is transferred between two more or less distantly related organisms. It is particularly common in bacteria where it contributes to adaptive…