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The \textsc{Bipartite Contraction} problem is to decide, given a graph $G$ and a parameter $k$, whether we can can obtain a bipartite graph from $G$ by at most $k$ edge contractions. The fixed-parameter tractability of the problem was shown…

Data Structures and Algorithms · Computer Science 2013-09-05 Sylvain Guillemot , Dániel Marx

We show that the Minimal Length-Bounded L-But problem can be computed in linear time with respect to L and the tree-width of the input graph as parameters. In this problem the task is to find a set of edges of a graph such that after…

Data Structures and Algorithms · Computer Science 2016-10-25 Dušan Knop , Pavel Dvořák

Given a weighted $n$-vertex graph $G$ with integer edge-weights taken from a range $[-M,M]$, we show that the minimum-weight simple path visiting $k$ vertices can be found in time $\tilde{O}(2^k \poly(k) M n^\omega) = O^*(2^k M)$. If the…

Data Structures and Algorithms · Computer Science 2013-07-10 Avinatan Hassidim , Orgad Keller , Moshe Lewenstein , Liam Roditty

Several algorithms build on the perfect phylogeny model to infer evolutionary trees. This problem is particularly hard when evolutionary trees are inferred from the fraction of genomes that have mutations in different positions, across…

Data Structures and Algorithms · Computer Science 2018-12-31 Bei Jia , Surjyendu Ray , Sam Safavi , José Bento

Recently, a new polynomial basis over binary extension fields was proposed such that the fast Fourier transform (FFT) over such fields can be computed in the complexity of order $\mathcal{O}(n\lg(n))$, where $n$ is the number of points…

Information Theory · Computer Science 2016-08-16 Sian-Jheng Lin , Tareq Y. Al-Naffouri , Yunghsiang S. Han

We present two new and efficient algorithms for computing all-pairs shortest paths. The algorithms operate on directed graphs with real (possibly negative) weights. They make use of directed path consistency along a vertex ordering d. Both…

Data Structures and Algorithms · Computer Science 2014-01-21 Léon R. Planken , Mathijs M. de Weerdt , Roman P. J. van der Krogt

In the \emph{$k$-Diameter-Optimally Augmenting Tree Problem} we are given a tree $T$ of $n$ vertices as input. The tree is embedded in an unknown \emph{metric} space and we have unlimited access to an oracle that, given two distinct…

Data Structures and Algorithms · Computer Science 2023-05-30 Davide Bilò , Luciano Gualà , Stefano Leucci , Luca Pepè Sciarria

We give an O(sqrt n log n)-query quantum algorithm for evaluating size-n AND-OR formulas. Its running time is poly-logarithmically greater after efficient preprocessing. Unlike previous approaches, the algorithm is based on a quantum walk…

Quantum Physics · Physics 2011-10-11 Ben W. Reichardt

Sorting a Permutation by Transpositions (SPbT) is an important problem in Bioinformtics. In this paper, we improve the running time of the best known approximation algorithm for SPbT. We use the permutation tree data structure of Feng and…

Data Structures and Algorithms · Computer Science 2009-10-20 Jesun Sahariar Firoz , Masud Hasan , Ashik Zinnat Khan , M. Sohel Rahman

We study approximation algorithms for the forest cover and bounded forest cover problems. A probabilistic $2+\epsilon$ approximation algorithm for the forest cover problem is given using the method of dual fitting. A deterministic algorithm…

Data Structures and Algorithms · Computer Science 2024-11-26 Daya Ram Gaur , Barun Gorain , Shaswati Patra , Rishi Ranjan Singh

We give a polynomial time, $(1+\epsilon)$-approximation algorithm for the traveling repairman problem (TRP) in the Euclidean plane and on weighted trees. This improves on the known quasi-polynomial time approximation schemes for these…

Data Structures and Algorithms · Computer Science 2014-09-22 René Sitters

We provide an $O(n \log n)$ algorithm computing the linear maximum induced matching width of a tree and an optimal layout.

Data Structures and Algorithms · Computer Science 2019-07-10 Svein Høgemo , Jan Arne Telle , Erlend Raa Vågset

We consider the problem of augmenting an $n$-vertex tree with one shortcut in order to minimize the diameter of the resulting graph. The tree is embedded in an unknown space and we have access to an oracle that, when queried on a pair of…

Data Structures and Algorithms · Computer Science 2018-10-03 Davide Bilò

The maximum common subtree isomorphism problem asks for the largest possible isomorphism between subtrees of two given input trees. This problem is a natural restriction of the maximum common subgraph problem, which is ${\sf NP}$-hard in…

Data Structures and Algorithms · Computer Science 2016-08-23 Andre Droschinsky , Nils M. Kriege , Petra Mutzel

Many problems are NP-hard and, unless P = NP, do not admit polynomial-time exact algorithms. The fastest known exact algorithms exactly usually take time exponential in the input size. Much research effort has gone into obtaining faster…

Data Structures and Algorithms · Computer Science 2025-01-27 Stefan Kratsch , Pascal Kunz

The Steiner tree problem is one of the classic and most fundamental $\mathcal{NP}$-hard problems: given an arbitrary weighted graph, seek a minimum-cost tree spanning a given subset of the vertices (terminals). Byrka \emph{et al}. proposed…

Data Structures and Algorithms · Computer Science 2018-11-02 Chi-Yeh Chen

We study the parameterized complexity of computing the tree-partition-width, a graph parameter equivalent to treewidth on graphs of bounded maximum degree. On one hand, we can obtain approximations of the tree-partition-width efficiently:…

Discrete Mathematics · Computer Science 2025-02-19 Hans L. Bodlaender , Carla Groenland , Hugo Jacob

Hypergraph width measures are a class of hypergraph invariants important in studying the complexity of constraint satisfaction problems (CSPs). We present a general exact exponential algorithm for a large variety of these measures. A…

Computational Complexity · Computer Science 2011-06-24 Lukas Moll , Siamak Tazari , Marc Thurley

In this experimental study we consider Steiner tree approximations that guarantee a constant approximation of ratio smaller than $2$. The considered greedy algorithms and approaches based on linear programming involve the incorporation of…

Data Structures and Algorithms · Computer Science 2015-12-10 Stephan Beyer , Markus Chimani

Dynamic programming on various graph decompositions is one of the most fundamental techniques used in parameterized complexity. Unfortunately, even if we consider concepts as simple as path or tree decompositions, such dynamic programming…