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Jupyter notebooks are widely used for machine learning (ML) prototyping. Yet, few debugging tools are designed for ML code in notebooks, partly, due to the lack of benchmarks. We introduce JunoBench, the first benchmark dataset of…

Software Engineering · Computer Science 2026-05-01 Yiran Wang , José Antonio Hernández López , Ulf Nilsson , Dániel Varró

Machine learning developers frequently use interactive computational notebooks, such as Jupyter notebooks, to host code for data processing and model training. Jupyter notebooks provide a convenient tool for writing machine learning…

Software Engineering · Computer Science 2025-01-17 Bihui Jin , Jiayue Wang , Pengyu Nie

Background. Jupyter notebooks are one of the main tools used by data scientists. Notebooks include features (configuration scripts, markdown, images, etc.) that make them challenging to analyze compared to traditional software. As a result,…

Software Engineering · Computer Science 2025-07-28 Wenyuan Jiang , Diany Pressato , Harsh Darji , Thibaud Lutellier

Jupyter notebooks are widely used for machine learning (ML) development due to their support for interactive and iterative experimentation. However, ML notebooks are highly prone to bugs, with crashes being among the most disruptive.…

Software Engineering · Computer Science 2026-02-24 Yiran Wang , José Antonio Hernández López , Ulf Nilsson , Dániel Varró

Computational notebooks, such as Jupyter, have been widely adopted by data scientists to write code for analyzing and visualizing data. Despite their growing adoption and popularity, there has been no thorough study to understand Jupyter…

In recent years, Jupyter notebooks have grown in popularity in several domains of software engineering, such as data science, machine learning, and computer science education. Their popularity has to do with their rich features for…

Software Engineering · Computer Science 2022-04-01 Konstantin Grotov , Sergey Titov , Vladimir Sotnikov , Yaroslav Golubev , Timofey Bryksin

Computational notebooks -- such as Jupyter or Colab -- combine text and data analysis code. They have become ubiquitous in the world of data science and exploratory data analysis. Since these notebooks present a different programming…

Software Engineering · Computer Science 2022-07-20 Derek Robinson , Neil A. Ernst , Enrique Larios Vargas , Margaret-Anne D. Storey

Machine Learning (ML) code, particularly within notebooks, often exhibits lower quality compared to traditional software. Bad practices arise at three distinct levels: general Python coding conventions, the organizational structure of the…

Software Engineering · Computer Science 2025-09-16 Marius Mignard , Steven Costiou , Nicolas Anquetil , Anne Etien

The machine learning development lifecycle is characterized by iterative and exploratory processes that rely on feedback mechanisms to ensure data and model integrity. Despite the critical role of feedback in machine learning engineering,…

Software Engineering · Computer Science 2024-08-02 Arumoy Shome , Luis Cruz , Diomidis Spinellis , Arie van Deursen

Jupyter notebooks has emerged as a standard tool for data science programming. Programs in Jupyter notebooks are different from typical programs as they are constructed by a collection of code snippets interleaved with text and…

Software Engineering · Computer Science 2021-03-02 Malin Källén , Tobias Wrigstad

As a representative literate programming platform, Jupyter is widely adopted by developers, data analysts, and researchers for replication, data sharing, documentation, interactive data visualization, and more. Understanding the bugs in the…

Software Engineering · Computer Science 2025-06-18 Yutian Tang , Hongchen Cao , Yuxi Chen , David Lo

In software development environments, code quality is crucial. This study aims to assist Machine Learning (ML) engineers in enhancing their code by identifying and correcting Data Leakage issues within their models. Data Leakage occurs when…

Software Engineering · Computer Science 2025-09-22 Owen Truong , Terrence Zhang , Arnav Marchareddy , Ryan Lee , Jeffery Busold , Michael Socas , Eman Abdullah AlOmar

Data science pipelines to train and evaluate models with machine learning may contain bugs just like any other code. Leakage between training and test data can lead to overestimating the model's accuracy during offline evaluations, possibly…

Software Engineering · Computer Science 2022-09-08 Chenyang Yang , Rachel A Brower-Sinning , Grace A. Lewis , Christian Kästner

Jupyter Notebook is the tool of choice of many data scientists in the early stages of ML workflows. The notebook format, however, has been criticized for inducing bad programming practices; indeed, researchers have already shown that…

Software Engineering · Computer Science 2022-05-25 Luigi Quaranta , Fabio Calefato , Filippo Lanubile

Context: Jupyter Notebook has emerged as a versatile tool that transforms how researchers, developers, and data scientists conduct and communicate their work. As the adoption of Jupyter notebooks continues to rise, so does the interest from…

Software Engineering · Computer Science 2026-01-06 Md Saeed Siddik , Hao Li , Cor-Paul Bezemer

The application of machine learning (ML) libraries has been tremendously increased in many domains, including autonomous driving systems, medical, and critical industries. Vulnerabilities of such libraries result in irreparable…

Software Engineering · Computer Science 2022-03-15 Nima Shiri Harzevili , Jiho Shin , Junjie Wang , Song Wang

Method names play an important role in communicating the purpose and behavior of their functionality. Research has shown that high-quality names significantly improve code comprehension and the overall maintainability of software. However,…

Software Engineering · Computer Science 2025-04-30 Carol Wong , Gunnar Larsen , Rocky Huang , Bonita Sharif , Anthony Peruma

Large Language Model (LLM) libraries have emerged as the foundational infrastructure powering today's AI revolution, serving as the backbone for LLM deployment, inference optimization, fine-tuning, and production serving across diverse…

Software Engineering · Computer Science 2025-06-17 Weipeng Jiang , Xiaoyu Zhang , Xiaofei Xie , Jiongchi Yu , Yuhan Zhi , Shiqing Ma , Chao Shen

Machine learning is a field of artificial intelligence (AI) that is becoming essential for several critical systems, making it a good target for threat actors. Threat actors exploit different Tactics, Techniques, and Procedures (TTPs)…

Cryptography and Security · Computer Science 2022-07-04 Lionel Nganyewou Tidjon , Foutse Khomh

Open-science collaboration using Jupyter Notebooks may expose expensively trained AI models, high-performance computing resources, and training data to security vulnerabilities, such as unauthorized access, accidental deletion, or misuse.…

Cryptography and Security · Computer Science 2024-10-01 Phuong Cao
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