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Duplicating one's own code makes it faster to write software. This expediency is particularly valuable for users of computational notebooks. Duplication allows notebook users to quickly test hypotheses and iterate over data. In this paper,…

Software Engineering · Computer Science 2020-05-29 Andreas Koenzen , Neil Ernst , Margaret-Anne Storey

Jupyter notebooks allow to bundle executable code with its documentation and output in one interactive environment, and they represent a popular mechanism to document and share computational workflows, including for research publications.…

Computational Engineering, Finance, and Science · Computer Science 2022-09-12 Sheeba Samuel , Daniel Mietchen

Machine-learning (ML) classifiers are increasingly used in quantum computing systems to improve multi-qubit readout discrimination and to mitigate correlated readout errors. These ML classifiers are an integral component of today's quantum…

Quantum Physics · Physics 2025-12-24 Anthony Etim , Jakub Szefer

This paper presents linear DML models for causal inference using the simplest Python code on a Jupyter notebook based on an Anaconda platform and compares the performance of different DML models. The results show that current Library API…

Software Engineering · Computer Science 2025-02-25 Shunxin Yao

Computational methods for predicting and designing biomolecular structures are increasingly powerful. While previous approaches relied on physics-based modeling, modern tools, such as AlphaFold2 in CASP14, leverage artificial intelligence…

Biomolecules · Quantitative Biology 2025-11-05 Michael Chungyoun , Gabe Au , Britnie Carpentier , Sreevarsha Puvada , Courtney Thomas , Jeffrey J. Gray

In the last two years, more than 200 papers have been written on how machine learning (ML) systems can fail because of adversarial attacks on the algorithms and data; this number balloons if we were to incorporate papers covering…

Machine Learning · Computer Science 2019-11-26 Ram Shankar Siva Kumar , David O Brien , Kendra Albert , Salomé Viljöen , Jeffrey Snover

Machine learning (ML) is an increasingly important scientific tool supporting decision making and knowledge generation in numerous fields. With this, it also becomes more and more important that the results of ML experiments are…

Machine Learning · Computer Science 2020-06-23 Sheeba Samuel , Frank Löffler , Birgitta König-Ries

Large Language Models (LLMs) are increasingly used to automate software generation in embedded machine learning workflows, yet their outputs often fail silently or behave unpredictably. This article presents an empirical investigation of…

Software Engineering · Computer Science 2025-09-16 Roberto Morabito , Guanghan Wu

Context: Conducting experiments is central to research machine learning research to benchmark, evaluate and compare learning algorithms. Consequently it is important we conduct reliable, trustworthy experiments. Objective: We investigate…

Jupyter Notebook is an interactive development environment commonly used for rapid experimentation of machine learning (ML) solutions. Describing the ML activities performed along code cells improves the readability and understanding of…

Software Engineering · Computer Science 2024-03-13 Miguel Perez , Selin Aydin , Horst Lichter

Abrupt and unexpected terminations of software are termed as software crashes. They can be challenging to analyze. Finding the root cause requires extensive manual effort and expertise to connect information sources like stack traces,…

Software Engineering · Computer Science 2025-02-12 Neetha Jambigi , Bartosz Bogacz , Moritz Mueller , Thomas Bach , Michael Felderer

With the growing adoption of Large Language Model (LLM) agents in persistent, real-world roles, they naturally encounter continuous streams of tasks and inevitable failures. A key limitation, however, is their inability to systematically…

Computation and Language · Computer Science 2026-01-19 Xuanbo Su , Yingfang Zhang , Hao Luo , Xiaoteng Liu , Leo Huang

Production machine learning (ML) systems fail silently -- not with crashes, but through wrong decisions. While observability is recognized as critical for ML operations, there is a lack empirical evidence of what practitioners actually…

Software Engineering · Computer Science 2025-10-29 Joran Leest , Ilias Gerostathopoulos , Patricia Lago , Claudia Raibulet

We present a study of crash-consistency bugs in persistent-memory (PM) file systems and analyze their implications for file-system design and testing crash consistency. We develop FlyTrap, a framework to test PM file systems for…

Operating Systems · Computer Science 2022-04-14 Hayley LeBlanc , Shankara Pailoor , Isil Dillig , James Bornholt , Vijay Chidambaram

Software defects are a major threat to the reliability of computer systems. The literature shows that more than 30% of bug reports submitted in large software projects are misclassified (i.e., are feature requests, or mistakes made by the…

Software Engineering · Computer Science 2025-03-04 Renato Andrade , César Teixeira , Nuno Laranjeiro , Marco Vieira

Computational notebooks became indispensable tools for research-related development, offering unprecedented interactivity and flexibility in the development process. However, these benefits come at the cost of reproducibility and an…

Software Engineering · Computer Science 2024-05-06 Konstantin Grotov , Sergey Titov , Yaroslav Zharov , Timofey Bryksin

The transition from AI/ML models to production-ready AI-based systems is a challenge for both data scientists and software engineers. In this paper, we report the results of a workshop conducted in a consulting company to understand how…

Software Engineering · Computer Science 2021-06-01 Filippo Lanubile , Fabio Calefato , Luigi Quaranta , Maddalena Amoruso , Fabio Fumarola , Michele Filannino

A learned database system uses machine learning (ML) internally to improve performance. We can expect such systems to be vulnerable to some adversarial-ML attacks. Often, the learned component is shared between mutually-distrusting users or…

Cryptography and Security · Computer Science 2025-07-03 Roei Schuster , Jin Peng Zhou , Thorsten Eisenhofer , Paul Grubbs , Nicolas Papernot

Background: Machine Learning (ML) systems rely on data to make predictions, the systems have many added components compared to traditional software systems such as the data processing pipeline, serving pipeline, and model training. Existing…

Software Engineering · Computer Science 2022-09-22 Tuan Dung Lai , Anj Simmons , Scott Barnett , Jean-Guy Schneider , Rajesh Vasa

Machine learning (ML) provides powerful tools for predictive modeling. ML's popularity stems from the promise of sample-level prediction with applications across a variety of fields from physics and marketing to healthcare. However, if not…