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The increasing complexity of neural networks and the energy consumption associated with training and inference create a need for alternative neuromorphic approaches, e.g. using optics. Current proposals and implementations rely on physical…

Optics · Physics 2023-08-31 Clara C. Wanjura , Florian Marquardt

Biological processes involve a variety of spatial and temporal scales. A holistic understanding of many biological processes therefore requires multi-scale models which capture the relevant properties on all these scales. In this manuscript…

Molecular Networks · Quantitative Biology 2015-06-23 Jan Hasenauer , Nick Jagiella , Sabrina Hross , Fabian J. Theis

Over the past decade, AI has made a remarkable progress. It is agreed that this is due to the recently revived Deep Learning technology. Deep Learning enables to process large amounts of data using simplified neuron networks that simulate…

Artificial Intelligence · Computer Science 2015-02-19 Emanuel Diamant

High-throughput data analyses are becoming common in biology, communications, economics and sociology. The vast amounts of data are usually represented in the form of matrices and can be considered as knowledge networks. Spectra-based…

Quantitative Methods · Quantitative Biology 2010-01-06 Viet-Anh Nguyen , Zdena Koukolikova-Nicola , Franco Bagnoli , Pietro Lio

In this paper we sum up our works on multiscale programs, mainly simulations. We first start with describing what multiscaling is about, how it helps perceiving signal from a background noise in a ?ow of data for example, for a direct…

Artificial Intelligence · Computer Science 2016-11-25 Pierrick Tranouez , Antoine Dutot

Biological multimodal large language models (MLLMs) have emerged as powerful foundation models for scientific discovery. However, existing models are specialized to a single modality, limiting their ability to solve inherently cross-modal…

Machine Learning · Computer Science 2026-03-17 Wonbin Lee , Dongki Kim , Sung Ju Hwang

One of the most compelling problems in science consists in understanding how living systems process information. After all, the way they process information defines their capacities to learning and adaptation. There is an increasing…

Adaptation and Self-Organizing Systems · Physics 2017-04-21 Carlos Eduardo Maldonado

MIMO mobile systems, with a large number of antennas at the base-station side, enable the concurrent transmission of multiple, spatially separated information streams and, therefore, enable improved network throughput and connectivity both…

Information Theory · Computer Science 2021-01-06 Konstantinos Nikitopoulos , Marcin Filo , Chathura Jayawardena , Rahim Tafazolli

Cells are constantly exposed to fluctuating environmental conditions. External signals are sensed, processed and integrated by cellular signal transduction networks, which translate input signals into specific cellular responses by means of…

Molecular Networks · Quantitative Biology 2012-05-29 Pau Rué , Núria Domedel-Puig , Jordi Garcia-Ojalvo , Antonio J. Pons

Many of the systems that appear in various signal processing applications are non-linear, for example, due to hardware impairments such as non-linear amplifiers and finite-resolution quantization. The Bussgang decomposition is a popular…

Signal Processing · Electrical Eng. & Systems 2020-05-05 Özlem Tuğfe Demir , Emil Björnson

Deep learning has been recently applied to many problems in wireless communications including modulation classification and symbol decoding. Many of the existing end-to-end learning approaches demonstrated robustness to signal distortions…

Signal Processing · Electrical Eng. & Systems 2020-09-15 Samer Hanna , Chris Dick , Danijela Cabric

Real-time decoding of target variables from multiple simultaneously recorded neural time-series modalities, such as discrete spiking activity and continuous field potentials, is important across various neuroscience applications. However, a…

Machine Learning · Computer Science 2025-12-16 Eray Erturk , Maryam M. Shanechi

The dynamics of complex systems, from financial markets to the brain, can be monitored in terms of multiple time series of activity of the constituent units, such as stocks or neurons respectively. While the main focus of time series…

Data Analysis, Statistics and Probability · Physics 2015-01-14 Assaf Almog , Diego Garlaschelli

Recovering the digital input of a time-discrete linear system from its (noisy) output is a significant challenge in the fields of data transmission, deconvolution, channel equalization, and inverse modeling. A variety of algorithms have…

Optimization and Control · Mathematics 2020-12-03 Sophie M. Fosson

Coupling of chaotic oscillators has evidenced conditions where synchronization is possible, therefore a nonlinear system can be driven to a particular state through input from a similar oscillator. Here we expand this concept of control of…

Adaptation and Self-Organizing Systems · Physics 2020-08-18 Robson Vieira , Weliton S. Martins , Sergio Barreiro , Rafael A. de Oliveira , Martine Chevrollier , Marcos Oriá

Multi-scale structures are prevalent in both natural and artificial systems, as they can handle increasing complexity. Several terms are employed almost interchangeably across various application domains to refer to the multi-scale concept…

Systems and Control · Electrical Eng. & Systems 2021-06-04 Ada Diaconescu , Louisa Jane Di Felice , Patricia Mellodge

Finding informative low-dimensional descriptions of high-dimensional simulation data (like the ones arising in molecular dynamics or kinetic Monte Carlo simulations of physical and chemical processes) is crucial to understanding physical…

Chemical Physics · Physics 2015-06-16 Carmeline J. Dsilva , Ronen Talmon , Neta Rabin , Ronald R. Coifman , Ioannis G. Kevrekidis

In this paper, we introduce a nonlinear stochastic model to describe the propagation of information inside a computer processor. In this model, a computational task is divided into stages, and information can flow from one stage to another.…

Probability · Mathematics 2024-11-26 Mohammad Daneshvar , Richard C. Barnard , Cory Hauck , Ilya Timofeyev

Empirically observed time series in physics, biology, or medicine, are commonly generated by some underlying dynamical system (DS) which is the target of scientific interest. There is an increasing interest to harvest machine learning…

Machine Learning · Computer Science 2022-07-07 Daniel Kramer , Philine Lou Bommer , Carlo Tombolini , Georgia Koppe , Daniel Durstewitz

The problem of information fusion from multiple data-sets acquired by multimodal sensors has drawn significant research attention over the years. In this paper, we focus on a particular problem setting consisting of a physical phenomenon or…

Machine Learning · Statistics 2018-11-21 Ori Katz , Ronen Talmon , Yu-Lun Lo , Hau-Tieng Wu