Related papers: Tropical combinatorics of max-linear Bayesian netw…
Let $G=(V, E)$ be an undirected graph. The spanning trees polytope $P(G)$ is the convex hull of the characteristic vectors of all spanning trees of $G$. In this paper, we describe all facets of $P(G)$ as a consequence of the facets of the…
We study tropical line arrangements associated to a three-regular graph $G$ that we refer to as \emph{tropical graph curves}. Roughly speaking, the tropical graph curve associated to $G$, whose genus is $g$, is an arrangement of $2g-2$…
Tropicalization is a procedure for associating a polyhedral complex in Euclidean space to a subvariety of an algebraic torus. We study the question of which graphs arise from tropicalizing algebraic curves. By using Baker's specialization…
We consider the problem of characterizing Bayesian networks up to unconditional equivalence, i.e., when directed acyclic graphs (DAGs) have the same set of unconditional $d$-separation statements. Each unconditional equivalence class (UEC)…
Phylogenetic networks are becoming of increasing interest to evolutionary biologists due to their ability to capture complex non-treelike evolutionary processes. From a combinatorial point of view, such networks are certain types of rooted…
In this paper, we develop a tropical analog of the classical flag variety that we call the flag Dressian. We find relations, which we call "tropical incidence relations", for when one tropical linear space is contained in another, and show…
We report a scalable hybrid quantum-classical machine learning framework to build Bayesian networks (BN) that captures the conditional dependence and causal relationships of random variables. The generation of a BN consists of finding a…
Given a graph $G$, we study the $2$-edge-connected subgraph polytope $\mathrm{TECSP}(G)$, which is given by the convex hull of the incidence vectors of all $2$-edge-connected subgraphs of $G$. We describe the lattice points of this polytope…
Directed Acyclic Graphs (DAGs) are central to uncovering causal structure in complex systems, yet learning a single DAG from data is often challenging: model uncertainty, finite samples, and a combinatorially large search space frequently…
We give a simple algebraic description of opetopes in terms of chain complexes, and we show how this description is related to combinatorial descriptions in terms of treelike structures. More generally, we show that the chain complexes…
The map which takes a square matrix $A$ to its polytrope is piecewise linear. We show that cones of linearity of this map form a polytopal fan partition of $\{R}^{n \times n}$, whose face lattice is anti-isomorphic to the lattice of…
Structural learning of directed acyclic graphs (DAGs) or Bayesian networks has been studied extensively under the assumption that data are independent. We propose a new Gaussian DAG model for dependent data which assumes the observations…
A polynomial complexity algorithm is designed which tests whether a point belongs to a given tropical linear variety.
After endowing the space of diagrams of probability spaces with an entropy distance, we study its large-scale geometry by identifying the asymptotic cone as a closed convex cone in a Banach space. We call this cone the tropical cone, and…
We study the subgroup structure of the semigroup of finitary tropical matrices under multiplication. We show that every maximal subgroup is isomorphic to the full linear automorphism group of a related tropical polytope, and that each of…
The algebraic foundation of tropical polynomial algebra provides the framework for the geometric construction of the supplement and the reversal of tropical varieties, thereby inducing a duality of reduced tropical varieties; for classes of…
A tropical curve \Gamma is a metric graph with possibly unbounded edges, and tropical rational functions are continuous piecewise linear functions with integer slopes. We define the complete linear system |D| of a divisor D on a tropical…
A connected matching in a graph G consists of a set of pairwise disjoint edges whose covered vertices induce a connected subgraph of G. While finding a connected matching of maximum cardinality is a well-solved problem, it is NP-hard to…
We analyze a new property of directed acyclic graphs (DAGs), called layerwidth, arising from a class of DAGs proposed by Eiter and Lukasiewicz. This class of DAGs permits certain problems of structural model-based causality and explanation…
This paper considers the problem of estimating the structure of multiple related directed acyclic graph (DAG) models. Building on recent developments in exact estimation of DAGs using integer linear programming (ILP), we present an ILP…