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The explosion of scientific literature has made the efficient and accurate extraction of structured data a critical component for advancing scientific knowledge and supporting evidence-based decision-making. However, existing tools often…

Human-Computer Interaction · Computer Science 2025-11-06 Xingbo Wang , Samantha L. Huey , Rui Sheng , Saurabh Mehta , Fei Wang

The rapid growth of AI for Science (AI4S) has underscored the significance of scientific datasets, leading to the establishment of numerous national scientific data centers and sharing platforms. Despite this progress, efficiently promoting…

Information Retrieval · Computer Science 2026-01-06 Qingqing Long , Haotian Chen , Chenyang Zhao , Xiaolei Du , Xuezhi Wang , Pengyao Wang , Chengzan Li , Yuanchun Zhou , Hengshu Zhu

Agents based on large language models have shown great potential in accelerating scientific discovery by leveraging their rich background knowledge and reasoning capabilities. In this paper, we introduce BioDiscoveryAgent, an agent that…

Artificial Intelligence · Computer Science 2025-03-11 Yusuf Roohani , Andrew Lee , Qian Huang , Jian Vora , Zachary Steinhart , Kexin Huang , Alexander Marson , Percy Liang , Jure Leskovec

The rapid advancements in Generative AI and Large Language Models promise to transform the way research is conducted, potentially offering unprecedented opportunities to augment scholarly workflows. However, effectively integrating AI into…

Search agents, which integrate language models (LMs) with web search, are becoming crucial for answering complex user queries. Constructing training datasets for deep research tasks, involving multi-step retrieval and reasoning, remains…

Computation and Language · Computer Science 2026-04-03 Nandan Thakur , Zijian Chen , Xueguang Ma , Jimmy Lin

Recent successes in virtual screening have been made possible by large models and extensive chemical libraries. However, combining these elements is challenging: the larger the model, the more expensive it is to run, making ultra-large…

Quantitative Methods · Quantitative Biology 2025-06-10 Vlad Vinogradov , Ivan Izmailov , Simon Steshin , Kong T. Nguyen

The rapid advancement of conversational search systems revolutionizes how information is accessed by enabling the multi-turn interaction between the user and the system. Existing conversational search systems are usually built with two…

Computation and Language · Computer Science 2025-07-14 Fengran Mo , Yifan Gao , Chuan Meng , Xin Liu , Zhuofeng Wu , Kelong Mao , Zhengyang Wang , Pei Chen , Zheng Li , Xian Li , Bing Yin , Meng Jiang

Conventionally, high-throughput computational materials searches start from an input set of bulk compounds extracted from material databases, and this set is screened for candidate materials for specific applications. In contrast, many…

Materials Science · Physics 2023-04-11 Rachel Woods-Robinson , Matthew K. Horton , Kristin A. Persson

Metamaterial discovery seeks microstructured materials whose geometry induces targeted mechanical behavior. Existing inverse-design methods can efficiently generate candidates, but they typically require explicit numerical property targets…

Artificial Intelligence · Computer Science 2026-05-01 Jianpeng Chen , Wangzhi Zhan , Dongqi Fu , Junkai Zhang , Zian Jia , Ling Li , Wei Wang , Dawei Zhou

Search intelligence is evolving from Deep Research to Wide Research, a paradigm essential for retrieving and synthesizing comprehensive information under complex constraints in parallel. However, progress in this field is impeded by the…

Computation and Language · Computer Science 2026-02-04 Ziyang Huang , Haolin Ren , Xiaowei Yuan , Jiawei Wang , Zhongtao Jiang , Kun Xu , Shizhu He , Jun Zhao , Kang Liu

Large Language Model (LLM)-based agents have emerged as a transformative approach for open-ended problem solving, with information seeking (IS) being a core capability that enables autonomous reasoning and decision-making. While prior…

Proteins are dynamic molecular machines whose biological functions, spanning enzymatic catalysis, signal transduction, and structural adaptation, are intrinsically linked to their motions. Designing proteins with targeted dynamic…

Biomolecules · Quantitative Biology 2025-02-17 Bo Ni , Markus J. Buehler

Distilling underlying principles from data has historically driven scientific breakthroughs. However, conventional data-driven machine learning often produces complex models that lack interpretability and generalization due to insufficient…

Materials Science · Physics 2025-07-28 Zhilong Song , Qionghua Zhou , Chunjin Ren , Chongyi Ling , Minggang Ju , Jinlan Wang

Retrieval-augmented generation (RAG) systems have advanced large language models (LLMs) in complex deep search scenarios requiring multi-step reasoning and iterative information retrieval. However, existing approaches face critical…

Computation and Language · Computer Science 2025-10-09 Shuang Sun , Huatong Song , Yuhao Wang , Ruiyang Ren , Jinhao Jiang , Junjie Zhang , Fei Bai , Jia Deng , Wayne Xin Zhao , Zheng Liu , Lei Fang , Zhongyuan Wang , Ji-Rong Wen

Data lakes enable easy maintenance of heterogeneous data in its native form. While this flexibility can accelerate data ingestion, it shifts the complexity of data preparation and query processing to data discovery tasks. One such task is…

Databases · Computer Science 2025-11-05 Tim Otto

Autonomous agents powered by large language models (LLMs) promise to accelerate scientific discovery end-to-end, but rigorously evaluating their capacity for verifiable discovery remains a central challenge. Existing benchmarks face a…

Artificial Intelligence · Computer Science 2026-02-04 Zhen Wang , Fan Bai , Zhongyan Luo , Jinyan Su , Kaiser Sun , Xinle Yu , Jieyuan Liu , Kun Zhou , Claire Cardie , Mark Dredze , Eric P. Xing , Zhiting Hu

The advent of Large Language Models (LLMs) has paved the way for AI search engines, e.g., SearchGPT, showcasing a new paradigm in human-internet interaction. However, most current AI search engines are limited to text-only settings,…

Computer Vision and Pattern Recognition · Computer Science 2024-11-28 Dongzhi Jiang , Renrui Zhang , Ziyu Guo , Yanmin Wu , Jiayi Lei , Pengshuo Qiu , Pan Lu , Zehui Chen , Chaoyou Fu , Guanglu Song , Peng Gao , Yu Liu , Chunyuan Li , Hongsheng Li

Large reasoning models (LRMs), such as OpenAI-o1 and DeepSeek-R1, demonstrate impressive long-horizon reasoning capabilities. However, their reliance on static internal knowledge limits their performance on complex, knowledge-intensive…

Computation and Language · Computer Science 2025-10-14 Xiaoxi Li , Jiajie Jin , Guanting Dong , Hongjin Qian , Yongkang Wu , Ji-Rong Wen , Yutao Zhu , Zhicheng Dou

Semantic search, a process aimed at delivering highly relevant search results by comprehending the searcher's intent and the contextual meaning of terms within a searchable dataspace, plays a pivotal role in information retrieval. In this…

Information Retrieval · Computer Science 2024-02-21 Lan Li , Jinpeng Lv

Information seeking and integration is a complex cognitive task that consumes enormous time and effort. Inspired by the remarkable progress of Large Language Models, recent works attempt to solve this task by combining LLMs and search…

Computation and Language · Computer Science 2025-11-03 Zehui Chen , Kuikun Liu , Qiuchen Wang , Jiangning Liu , Wenwei Zhang , Kai Chen , Feng Zhao