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Traditional query processing relies on engines that are carefully optimized and engineered by many experts. However, new techniques and user requirements evolve rapidly, and existing systems often cannot keep pace. At the same time, these…

Databases · Computer Science 2026-03-03 Jiale Lao , Immanuel Trummer

Genetic interactions and protein co-dependencies shape cellular fitness, buffering capacity, and disease vulnerability. However, systematic integration of co-dependency relationships across heterogeneous datasets remains limited. Here, we…

Molecular Networks · Quantitative Biology 2026-03-10 Iresha De Silva , Shantha Pathma Bandu , Rune T. Kidmose , Genona T. Maseras , Thomas Bataillon , Xavier Bofill-De Ros

Large language models (LLMs) integrated with autonomous agents hold significant potential for advancing scientific discovery through automated reasoning and task execution. However, applying LLM agents to drug discovery is still constrained…

Artificial Intelligence · Computer Science 2025-07-29 Kun Li , Zhennan Wu , Shoupeng Wang , Jia Wu , Shirui Pan , Wenbin Hu

Agentic AI is rapidly advancing in healthcare and biomedical research. However, in medical image analysis, their performance and adoption remain limited due to the lack of a robust ecosystem, insufficient toolsets, and the absence of…

Computer Vision and Pattern Recognition · Computer Science 2025-09-25 Songhao Li , Jonathan Xu , Tiancheng Bao , Yuxuan Liu , Yuchen Liu , Yihang Liu , Lilin Wang , Wenhui Lei , Sheng Wang , Yinuo Xu , Yan Cui , Jialu Yao , Shunsuke Koga , Zhi Huang

Many ecological questions center on complex phenomena, such as species interactions, behaviors, phenology, and responses to disturbance, that are inherently difficult to observe and sparsely documented. Community science platforms such as…

Due to the excellent capacities of large language models (LLMs), it becomes feasible to develop LLM-based agents for reliable user simulation. Considering the scarcity and limit (e.g., privacy issues) of real user data, in this paper, we…

Information Retrieval · Computer Science 2024-02-28 Ruiyang Ren , Peng Qiu , Yingqi Qu , Jing Liu , Wayne Xin Zhao , Hua Wu , Ji-Rong Wen , Haifeng Wang

Large language models (LLMs), adopted to understand human language, drive the development of artificial intelligence (AI) web search agents. Compared to traditional search engines, LLM-powered AI search agents are capable of understanding…

Information Retrieval · Computer Science 2025-02-25 Chuanrui Hu , Shichong Xie , Baoxin Wang , Bin Chen , Xiaofeng Cong , Jun Zhang

The development of AI-assisted chemical synthesis tools requires comprehensive datasets covering diverse reaction types, yet current high-throughput experimental (HTE) approaches are expensive and limited in scope. Chemical literature…

Information Retrieval · Computer Science 2025-07-01 Kexin Chen , Yuyang Du , Junyou Li , Hanqun Cao , Menghao Guo , Xilin Dang , Lanqing Li , Jiezhong Qiu , Pheng Ann Heng , Guangyong Chen

The prevailing model for disseminating scientific knowledge relies on individual publications dispersed across numerous journals and archives. This legacy system is ill suited to the recent exponential proliferation of publications,…

To retrieve and compare scientific data of simulations and experiments in materials science, data needs to be easily accessible and machine readable to qualify and quantify various materials science phenomena. The recent progress in open…

Materials Science · Physics 2025-03-25 Balduin Katzer , Steffen Klinder , Katrin Schulz

The rapid progress in diffusion models, transformers, and language agents has unlocked new possibilities, yet their potential in user interfaces and commercial applications remains underexplored. We present Sketch-Search Agent, a novel…

Information Retrieval · Computer Science 2025-04-15 Edward Sun

Recent advances in Artificial Intelligence have enabled multi-modal systems to model and translate diverse information spaces. Extending beyond text and vision, we introduce OneProt, a multi-modal AI for proteins that integrates structural,…

Detecting biases in structured data is a complex and time-consuming task. Existing automated techniques are limited in diversity of data types and heavily reliant on human case-by-case handling, resulting in a lack of generalizability.…

Artificial Intelligence · Computer Science 2025-04-08 Haoxuan Li , Mingyu Derek Ma , Jen-tse Huang , Zhaotian Weng , Wei Wang , Jieyu Zhao

Due to the advantages in the cost-efficiency and reproducibility, user simulation has become a promising solution to the user-centric evaluation of information retrieval systems. Nonetheless, accurately simulating user search behaviors has…

Information Retrieval · Computer Science 2024-10-30 Erhan Zhang , Xingzhu Wang , Peiyuan Gong , Yankai Lin , Jiaxin Mao

Deep search has become a crucial capability for frontier multimodal agents, enabling models to solve complex questions through active search, evidence verification, and multi-step reasoning. Despite rapid progress, top-tier multimodal…

Computer Vision and Pattern Recognition · Computer Science 2026-05-07 Shuang Chen , Kaituo Feng , Hangting Chen , Wenxuan Huang , Dasen Dai , Quanxin Shou , Yunlong Lin , Xiangyu Yue , Shenghua Gao , Tianyu Pang

Deep Research systems have revolutionized how LLMs solve complex questions through iterative reasoning and evidence gathering. However, current systems remain fundamentally constrained to textual web data, overlooking the vast knowledge…

Information Retrieval · Computer Science 2025-10-27 Kuicai Dong , Shurui Huang , Fangda Ye , Wei Han , Zhi Zhang , Dexun Li , Wenjun Li , Qu Yang , Gang Wang , Yichao Wang , Chen Zhang , Yong Liu

Modern machine learning algorithms are increasingly computationally demanding, requiring specialized hardware and distributed computation to achieve high performance in a reasonable time frame. Many hyperparameter search algorithms have…

Machine Learning · Computer Science 2018-07-16 Richard Liaw , Eric Liang , Robert Nishihara , Philipp Moritz , Joseph E. Gonzalez , Ion Stoica

Product search is generally recognized as the first and foremost stage of online shopping and thus significant for users and retailers of e-commerce. Most of the traditional retrieval methods use some similarity functions to match the…

Information Retrieval · Computer Science 2019-09-02 Jie Zou , Evangelos Kanoulas

Large language models hold promise as scientific assistants, yet existing agents either rely solely on algorithm evolution or on deep research in isolation, both of which face critical limitations. Pure algorithm evolution, as in…

Artificial Intelligence · Computer Science 2025-10-08 Gang Liu , Yihan Zhu , Jie Chen , Meng Jiang

Developing a universal model that can efficiently and effectively respond to a wide range of information access requests -- from retrieval to recommendation to question answering -- has been a long-lasting goal in the information retrieval…

Information Retrieval · Computer Science 2023-04-27 Hansi Zeng , Surya Kallumadi , Zaid Alibadi , Rodrigo Nogueira , Hamed Zamani