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Hierarchical classification offers an approach to incorporate the concept of mistake severity by leveraging a structured, labeled hierarchy. However, decoding in such settings frequently relies on heuristic decision rules, which may not…

Machine Learning · Computer Science 2025-06-03 Roman Plaud , Alexandre Perez-Lebel , Matthieu Labeau , Antoine Saillenfest , Thomas Bonald

Medical data range from genomic sequences and retinal photographs to structured laboratory results and unstructured clinical narratives. Although these modalities appear disparate, many encode convergent information about a single…

Quantitative Methods · Quantitative Biology 2025-06-06 Salil Patel

Electronic health records (EHR) systematically represent patient data in digital form. However, text and visualization based EHR systems are poorly integrated in the hospital workflow due to their complex and rather non-intuitive access…

Human-Computer Interaction · Computer Science 2020-02-28 Dmitri Presnov , Julia Kurz , Judith Willkomm , Daniel Alt , Johannes Dillmann , Robert Zilke , Veit Braun , Cornelius Schubert , Andreas Kolb

Drug repositioning (DR) refers to identification of novel indications for the approved drugs. The requirement of huge investment of time as well as money and risk of failure in clinical trials have led to surge in interest in drug…

Computation and Language · Computer Science 2017-05-23 Sahil Manchanda , Ashish Anand

Electronic Health Records (EHR) have been heavily used in modern healthcare systems for recording patients' admission information to hospitals. Many data-driven approaches employ temporal features in EHR for predicting specific diseases,…

Machine Learning · Computer Science 2021-12-07 Chang Lu , Chandan K. Reddy , Yue Ning

Accurate prediction of physician referral links is essential for optimizing care coordination and reducing fragmentation in healthcare delivery. However, existing computational methods, ranging from triadic closure heuristics to graph…

Social and Information Networks · Computer Science 2026-05-05 Zhexi Gu , Jiaxin Ying , Xu-Wen Wang , Can Chen

Building successful recommender systems requires uncovering the underlying dimensions that describe the properties of items as well as users' preferences toward them. In domains like clothing recommendation, explaining users' preferences…

Information Retrieval · Computer Science 2016-04-21 Ruining He , Chunbin Lin , Jianguo Wang , Julian McAuley

It is always well believed that parsing an image into constituent visual patterns would be helpful for understanding and representing an image. Nevertheless, there has not been evidence in support of the idea on describing an image with a…

Computer Vision and Pattern Recognition · Computer Science 2019-09-11 Ting Yao , Yingwei Pan , Yehao Li , Tao Mei

Recently, there has been a surge of interest in extending the success of large language models (LLMs) from texts to molecules. Most existing approaches adopt a graph neural network to represent a molecule as a series of node tokens for…

Computation and Language · Computer Science 2025-06-09 Yongqiang Chen , Quanming Yao , Juzheng Zhang , James Cheng , Yatao Bian

Taxonomy is a hierarchically structured knowledge graph that plays a crucial role in machine intelligence. The taxonomy expansion task aims to find a position for a new term in an existing taxonomy to capture the emerging knowledge in the…

Computation and Language · Computer Science 2022-04-27 Suyuchen Wang , Ruihui Zhao , Xi Chen , Yefeng Zheng , Bang Liu

Structuring latent representations in a hierarchical manner enables models to learn patterns at multiple levels of abstraction. However, most prevalent image understanding models focus on visual similarity, and learning visual hierarchies…

Computer Vision and Pattern Recognition · Computer Science 2026-01-07 Ziwei Wang , Sameera Ramasinghe , Chenchen Xu , Julien Monteil , Loris Bazzani , Thalaiyasingam Ajanthan

While the volume of scholarly publications has increased at a frenetic pace, accessing and consuming the useful candidate papers, in very large digital libraries, is becoming an essential and challenging task for scholars. Unfortunately,…

Information Retrieval · Computer Science 2019-01-01 Zhuoren Jiang , Yue Yin , Liangcai Gao , Yao Lu , Xiaozhong Liu

For natural language understanding and generation, embedding concepts using an order-based representation is an essential task. Unlike traditional point vector based representation, an order-based representation imposes geometric…

Computation and Language · Computer Science 2024-04-18 Croix Gyurek , Niloy Talukder , Mohammad Al Hasan

The recommendation of medication is a vital aspect of intelligent healthcare systems, as it involves prescribing the most suitable drugs based on a patient's specific health needs. Unfortunately, many sophisticated models currently in use…

Information Retrieval · Computer Science 2025-01-28 Qidong Liu , Xian Wu , Xiangyu Zhao , Yuanshao Zhu , Zijian Zhang , Feng Tian , Yefeng Zheng

Graph generation techniques are increasingly being adopted for drug discovery. Previous graph generation approaches have utilized relatively small molecular building blocks such as atoms or simple cycles, limiting their effectiveness to…

Machine Learning · Computer Science 2020-04-21 Wengong Jin , Regina Barzilay , Tommi Jaakkola

With increasing and extensive use of electronic health records, clinicians are often under time pressure when they need to retrieve important information efficiently among large amounts of patients' health records in clinics. While a search…

Information Retrieval · Computer Science 2020-08-05 Zhiyun Ren , Bo Peng , Titus K. Schleyer , Xia Ning

Recent advancements in medical entity linking have been applied in the area of scientific literature and social media data. However, with the adoption of telemedicine and conversational agents such as Alexa in healthcare settings, medical…

Computation and Language · Computer Science 2020-10-13 Shaoqing Yuan , Parminder Bhatia , Busra Celikkaya , Haiyang Liu , Kyunghwan Choi

Drug repositioning is an attractive cost-efficient strategy for the development of treatments for human diseases. Here, we propose an interpretable model that learns disease self-representations for drug repositioning. Our…

Top-$N$ sequential recommendation models each user as a sequence of items interacted in the past and aims to predict top-$N$ ranked items that a user will likely interact in a `near future'. The order of interaction implies that sequential…

Information Retrieval · Computer Science 2018-09-21 Jiaxi Tang , Ke Wang

Forecasting healthcare time series data is vital for early detection of adverse outcomes and patient monitoring. However, it can be challenging in practice due to variable medication administration and unique pharmacokinetic (PK) properties…

Machine Learning · Computer Science 2025-12-17 Willa Potosnak , Cristian Challu , Kin G. Olivares , Keith A. Dufendach , Artur Dubrawski