Related papers: On merge trees with a given homological sequence
We consider the genealogy tree for a critical branching process conditioned on non-extinction. We enumerate vertices in each generation of the tree so that for each two generations one can define a monotone map describing the…
Topological phylogenetic trees can be assigned edge weights in several natural ways, highlighting different aspects of the tree. Here the rooted triple and quartet metrizations are introduced, and applied to formulate novel fast methods of…
We consider random binary trees that appear as the output of certain standard algorithms for sorting and searching if the input is random. We introduce the subtree size metric on search trees and show that the resulting metric spaces…
We establish an inequality which involves a non-negative function defined on the vertices of a finite $m$-ary regular rooted tree. The inequality may be thought of as relating an interaction energy defined on the free vertices of the tree…
The register function (or Horton-Strahler number) of a binary tree is a well-known combinatorial parameter. We study a reduction procedure for binary trees which offers a new interpretation for the register function as the maximal number of…
From the topological viewpoint, Morse shellings of finite simplicial complexes are {\it pinched} handle decompositions and extend the classical shellings. We prove that every discrete Morse function on a finite simplicial complex induces…
A closed-form formula is derived for the number of occurrences of matches of a multiset of patterns among all ordered (plane-planted) trees with a given number of edges. A pattern looks like a tree, with internal nodes and leaves, but also…
Persistent Homology (PH) allows tracking homology features like loops, holes and their higher-dimensional analogs, along with a single-parameter family of nested spaces. Currently, computing descriptors for complex data characterized by…
We show that for any fixed dense graph G and bounded-degree tree T on the same number of vertices, a modest random perturbation of G will typically contain a copy of T . This combines the viewpoints of the well-studied problems of embedding…
We develop a discrete Morse theory for open simplicial complexes $K=X\setminus T$ where $X$ is a simplicial complex and $T$ a subcomplex of $X$. A discrete Morse function $f$ on $K$ gives rise to a discrete Morse function on the order…
Metrics on rooted phylogenetic trees are integral to a number of areas of phylogenetic analysis. Cluster-similarity metrics have recently been introduced in order to limit skew in the distribution of distances, and to ensure that trees in…
The register function (or Horton-Strahler number) of a binary tree is a well-known combinatorial parameter. We study a reduction procedure for binary trees which offers a new interpretation for the register function as the maximal number of…
Geometric graphs appear in many real-world data sets, such as road networks, sensor networks, and molecules. We investigate the notion of distance between embedded graphs and present a metric to measure the distance between two geometric…
We prove an infinite analogue of the main theorem of discrete Morse theory formulated in terms of discrete Morse matchings. Our theorem holds under the assumption that the given Morse matching induces finitely many equivalence classes of…
On a smooth manifold, we associate to any closed differential form a mapping cone complex. The cohomology of this mapping cone complex can vary with the de Rham cohomology class of the closed form. We present a novel Morse theoretical…
Hierarchical clustering is a popular method for analyzing data which associates a tree to a dataset. Hartigan consistency has been used extensively as a framework to analyze such clustering algorithms from a statistical point of view.…
You might know that the name "tree transducers" refers to various kinds of automata that compute functions on ranked trees, i.e. terms over a first-order signature. But have you ever wondered about how to remember what a macro tree…
This paper is centered on the random graph generated by a Doeblin-type coupling of discrete time processes on a countable state space whereby when two paths meet, they merge. This random graph is studied through a novel subgraph, called a…
We study the growth of a time-ordered rooted tree by probabilistic attachment of new vertices to leaves. We construct a likelihood function of the leaves based on the connectivity of the tree. We take such connectivity to be induced by the…
A merge tree is a topological descriptor of a real-valued function. Merge trees are used in visualization and topological data analysis, either directly or as a means to another end: computing a 0-dimensional persistence diagram,…