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Motivation: In many fMRI studies, respiratory signals are often missing or of poor quality. Therefore, it could be highly beneficial to have a tool to extract respiratory variation (RV) waveforms directly from fMRI data without the need for…

Machine Learning · Computer Science 2024-05-02 Abdoljalil Addeh , Fernando Vega , Rebecca J. Williams , G. Bruce Pike , M. Ethan MacDonald

In many fMRI studies, respiratory signals are unavailable or do not have acceptable quality. Consequently, the direct removal of low-frequency respiratory variations from BOLD signals is not possible. This study proposes a one-dimensional…

Signal Processing · Electrical Eng. & Systems 2023-07-12 Abdoljalil Addeh , Fernando Vega , Rebecca J Williams , Ali Golestani , G. Bruce Pike , M. Ethan MacDonald

Head motion is an omnipresent confounder of magnetic resonance image (MRI) analyses as it systematically affects morphometric measurements, even when visual quality control is performed. In order to estimate subtle head motion, that remains…

Image and Video Processing · Electrical Eng. & Systems 2026-04-03 Clemens Pollak , David Kügler , Martin Reuter

Motion correction is an essential preprocessing step in functional Magnetic Resonance Imaging (fMRI) of the fetal brain with the aim to remove artifacts caused by fetal movement and maternal breathing and consequently to suppress erroneous…

Head motion during functional Magnetic Resonance Imaging acquisition can significantly contaminate the neural signal and introduce spurious, distance-dependent changes in signal correlations. This can heavily confound studies of…

Image and Video Processing · Electrical Eng. & Systems 2020-01-23 Vyom Raval , Kevin P. Nguyen , Albert Montillo

Patient motion is well-known for degrading image quality during medical imaging. Especially positron emission tomography (PET) is susceptible to motion due to its usually long scan times. In hybrid PET/MRI (magnetic resonance imaging),…

Medical Physics · Physics 2019-05-21 Lynn Johann Frohwein , Florian Büther , Klaus Peter Schäfers

Motion-related artifacts are inevitable in Magnetic Resonance Imaging (MRI) and can bias automated neuroanatomical metrics such as cortical thickness. These biases can interfere with statistical analysis which is a major concern as motion…

Image and Video Processing · Electrical Eng. & Systems 2025-06-11 Charles Bricout , Samira Ebrahimi Kahou , Sylvain Bouix

Despite the fact that neural networks are widely used for speech-driven head motion synthesis, it is well-known that the output of neural networks is noisy or discontinuous due to the limited capability of deep neural networks in predicting…

Signal Processing · Electrical Eng. & Systems 2019-07-26 JinHong Lu , Hiroshi Shimodaira

Inertial sensors can track object kinematics, however, unbounded drift from integrating noisy signals makes them impractical for MRI motion correction at millimeter resolution and minute-long scans. We introduce MR-Compass, which exploits…

Image and Video Processing · Electrical Eng. & Systems 2026-03-03 Musa Tunc Arslan , Fatih Calakli , Joshua Auger , Hongli Fan , Alan J Macy , Simon K Warfield

Motion remains a major challenge in magnetic resonance (MR) imaging, particularly in free-breathing cardiac MR imaging, where data are acquired over multiple heartbeats at varying respiratory phases. We adopt a model-based approach for…

Image and Video Processing · Electrical Eng. & Systems 2025-01-29 Kwang Eun Jang , Mario O. Malavé , Dwight G. Nishimura

The technology of functional Magnetic Resonance Imaging (fMRI) based on Blood Oxygen Level Dependent (BOLD) signal has been widely used in clinical treatments and brain function researches. The BOLD signal has to be preprocessed before…

Neurons and Cognition · Quantitative Biology 2017-12-29 Yunxiang Ge , Yu Pan , Weibei Dou

Head movement during scanning impedes activation detection in fMRI studies. Head motion in fMRI acquired using slice-based Echo Planar Imaging (EPI) can be estimated and compensated by aligning the images onto a reference volume through…

Computer Vision and Pattern Recognition · Computer Science 2015-11-12 Yu-Hui Chen , Roni Mittelman , Boklye Kim , Charles Meyer , Alfred Hero

Contemporary neuroscience has embraced network science to study the complex and self-organized structure of the human brain; one of the main outstanding issues is that of inferring from measure data, chiefly functional Magnetic Resonance…

Optimization and Control · Mathematics 2017-03-31 Giulia Prando , Mattia Zorzi , Alessandra Bertoldo , Alessandro Chiuso

Magnetic resonance imaging (MRI) is a widely known medical imaging technique used to assess the heart function. Deep learning (DL) models perform several tasks in cardiac MRI (CMR) images with good efficacy, such as segmentation,…

Image and Video Processing · Electrical Eng. & Systems 2022-05-03 Daniel Lima , Catharine Graves , Marco Gutierrez , Bruno Brandoli , Jose Rodrigues-Jr

Dynamic magnetic resonance imaging (dMRI) captures temporally-resolved anatomy but is often challenged by limited sampling and motion-induced artifacts. Conventional motion-compensated reconstructions typically rely on pre-estimated optical…

Computer Vision and Pattern Recognition · Computer Science 2025-11-24 Baoqing Li , Yuanyuan Liu , Congcong Liu , Qingyong Zhu , Jing Cheng , Yihang Zhou , Hao Chen , Zhuo-Xu Cui , Dong Liang

Functional magnetic resonance imaging (fMRI) enables indirect detection of brain activity changes via the blood-oxygen-level-dependent (BOLD) signal. Conventional analysis methods mainly rely on the real-valued magnitude of these signals.…

Methodology · Statistics 2023-10-31 Zhengxin Wang , Daniel B. Rowe , Xinyi Li , D. Andrew Brown

Interactions between the brain and body are of fundamental importance for human behavior and health. Functional magnetic resonance imaging (fMRI) captures whole-brain activity noninvasively, and modeling how fMRI signals interact with…

Magnetic resonance fingerprinting (MRF) enables fast and multiparametric MR imaging. Despite fast acquisition, the state-of-the-art reconstruction of MRF based on dictionary matching is slow and lacks scalability. To overcome these…

Image and Video Processing · Electrical Eng. & Systems 2021-03-11 Fabian Balsiger , Alain Jungo , Olivier Scheidegger , Benjamin Marty , Mauricio Reyes

We consider the problem of precision matrix estimation where, due to extraneous confounding of the underlying precision matrix, the data are independent but not identically distributed. While such confounding occurs in many scientific…

Machine Learning · Statistics 2019-07-01 Sinong Geng , Mladen Kolar , Oluwasanmi Koyejo

Fetal functional Magnetic Resonance Imaging (fMRI) has emerged as a powerful tool for investigating brain development in utero, holding promise for generating developmental disease biomarkers and supporting prenatal diagnosis. However, to…

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