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Direct Preference Optimization (DPO) has proven to be an effective solution for mitigating hallucination in Multimodal Large Language Models (MLLMs) by learning from preference pairs. One of its key challenges lies in how to transfer the…

Machine Learning · Computer Science 2026-05-07 Huatian Zhang , Zhendong Mao , Lei Zhang , Yongdong Zhang

Large Language Models (LLMs) have demonstrated remarkable potential in automating software development tasks. While recent advances leverage Supervised Fine-Tuning (SFT) and Direct Preference Optimization (DPO) to align models with human…

Software Engineering · Computer Science 2025-12-09 Xin Yin , Chao Ni , Xiaohu Yang

Direct Preference Optimization (DPO) has been proposed as a promising alternative to Proximal Policy Optimization (PPO) based Reinforcement Learning with Human Feedback (RLHF). However, empirical evaluations consistently reveal suboptimal…

Machine Learning · Computer Science 2025-03-03 Qinwei Ma , Jingzhe Shi , Can Jin , Jenq-Neng Hwang , Serge Belongie , Lei Li

Understanding how proteins structurally interact is crucial to modern biology, with applications in drug discovery and protein design. Recent machine learning methods have formulated protein-small molecule docking as a generative problem…

With the rapid development and widespread application of Large Language Models (LLMs), their potential safety risks have attracted widespread attention. Reinforcement Learning from Human Feedback (RLHF) has been adopted to enhance the…

Artificial Intelligence · Computer Science 2026-03-25 Shiji Zhao , Mengyang Wang , Shukun Xiong , Fangzhou Chen , Qihui Zhu , Shouwei Ruan , Yisong Xiao , Ranjie Duan , Xun Chen , XingXing Wei

Deep learning has transformed protein design, enabling accurate structure prediction, sequence optimization, and de novo protein generation. Advances in single-chain protein structure prediction via AlphaFold2, RoseTTAFold, ESMFold, and…

Machine Learning · Computer Science 2025-02-27 Gregory W. Kyro , Tianyin Qiu , Victor S. Batista

Protein language models have emerged as powerful tools for sequence generation, offering substantial advantages in functional optimization and denovo design. However, these models also present significant risks of generating harmful protein…

Artificial Intelligence · Computer Science 2025-07-16 Yuhao Wang , Keyan Ding , Kehua Feng , Zeyuan Wang , Ming Qin , Xiaotong Li , Qiang Zhang , Huajun Chen

Aligning large language models (LLMs) with human values is an increasingly critical step in post-training. Direct Preference Optimization (DPO) has emerged as a simple, yet effective alternative to reinforcement learning from human feedback…

Artificial Intelligence · Computer Science 2025-07-29 Yifan Wang , Runjin Chen , Bolian Li , David Cho , Yihe Deng , Ruqi Zhang , Tianlong Chen , Zhangyang Wang , Ananth Grama , Junyuan Hong

A single language model, even when aligned with labelers through reinforcement learning from human feedback (RLHF), may not suit all human preferences. Recent approaches therefore prefer customization, gathering multi-dimensional feedback,…

Machine Learning · Computer Science 2024-08-20 Zhanhui Zhou , Jie Liu , Jing Shao , Xiangyu Yue , Chao Yang , Wanli Ouyang , Yu Qiao

Effective training of language models (LMs) for mathematical reasoning tasks demands high-quality supervised fine-tuning data. Besides obtaining annotations from human experts, a common alternative is sampling from larger and more powerful…

Computation and Language · Computer Science 2024-07-26 Tianduo Wang , Shichen Li , Wei Lu

Code generation models have shown significant potential for automating programming tasks. However, the challenge of generating accurate and reliable code persists due to the highly complex and long-reasoning nature of the task. Even…

Software Engineering · Computer Science 2025-06-04 Kechi Zhang , Ge Li , Jia Li , Yihong Dong , Jia Li , Zhi Jin

Motivation: RNA design aims to find RNA sequences that fold into a given target secondary structure, a problem also known as RNA inverse folding. However, not all target structures are designable. Recent advances in RNA designability have…

Data Structures and Algorithms · Computer Science 2026-04-28 Tianshuo Zhou , David H. Mathews , Liang Huang

Direct Preference Optimization (DPO) has emerged as a lightweight and effective alternative to Reinforcement Learning from Human Feedback (RLHF) and Reinforcement Learning with AI Feedback (RLAIF) for aligning large language and…

Artificial Intelligence · Computer Science 2025-12-16 Zihui Zhao , Zechang Li

Direct Preference Optimization is an offline post-SFT method for aligning language models from preference pairs, with strong results in instruction following and summarization. However, DPO's sequence-level implicit reward can be brittle…

Computation and Language · Computer Science 2026-03-03 Samah Fodeh , Linhai Ma , Ganesh Puthiaraju , Srivani Talakokkul , Afshan Khan , Ashley Hagaman , Sarah R. Lowe , Aimee Kendall Roundtree

A critical component of the current generation of language models is preference alignment, which aims to precisely control the model's behavior to meet human needs and values. The most notable among such methods is Reinforcement Learning…

Artificial Intelligence · Computer Science 2024-10-22 Oh Joon Kwon , Daiki E. Matsunaga , Kee-Eung Kim

We present InvMSAFold, an inverse folding method for generating protein sequences that is optimized for diversity and speed. For a given structure, InvMSAFold generates the parameters of a probability distribution over the space of…

Quantitative Methods · Quantitative Biology 2025-05-30 Luca Alessandro Silva , Barthelemy Meynard-Piganeau , Carlo Lucibello , Christoph Feinauer

The rapid development of large language model (LLM) alignment algorithms has resulted in a complex and fragmented landscape, with limited clarity on the effectiveness of different methods and their inter-connections. This paper introduces…

This study evaluates Direct Preference Optimization (DPO) and its variants for aligning Large Language Models (LLMs) with human preferences, testing three configurations: (1) with Supervised Fine Tuning (SFT), (2) without SFT, and (3)…

Computation and Language · Computer Science 2025-02-11 Amir Saeidi , Shivanshu Verma , Md Nayem Uddin , Chitta Baral

Preferences within a group of people are not uniform but follow a distribution. While existing alignment methods like Direct Preference Optimization (DPO) attempt to steer models to reflect human preferences, they struggle to capture the…

Computation and Language · Computer Science 2025-05-14 Binwei Yao , Zefan Cai , Yun-Shiuan Chuang , Shanglin Yang , Ming Jiang , Diyi Yang , Junjie Hu

Human image generation is a key focus in image synthesis due to its broad applications, but even slight inaccuracies in anatomy, pose, or details can compromise realism. To address these challenges, we explore Direct Preference Optimization…

Computer Vision and Pattern Recognition · Computer Science 2025-04-10 Sanghyeon Na , Yonggyu Kim , Hyunjoon Lee