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Attention-based deep networks have been successfully applied on textual data in the field of NLP. However, their application on protein sequences poses additional challenges due to the weak semantics of the protein words, unlike the plain…

Machine Learning · Computer Science 2022-08-29 Ashish Ranjan , Md Shah Fahad , Akshay Deepak

This study proposes a deep learning model based on the combination of convolutional neural network (CNN) and bidirectional long short-term memory network (BiLSTM) for discriminant analysis of financial systemic risk. The model first uses…

Machine Learning · Computer Science 2025-02-12 Yu Cheng , Zhen Xu , Yuan Chen , Yuhan Wang , Zhenghao Lin , Jinsong Liu

Flow-Imaging Microscopy (FIM) is commonly used in both academia and industry to characterize subvisible particles (those $\le 25 \mu m$ in size) in protein therapeutics. Pharmaceutical companies are required to record vast volumes of FIM…

Quantitative Methods · Quantitative Biology 2017-09-04 Christopher P. Calderon , Austin L. Daniels , Theodore W. Randolph

Machine learning is widely used to analyze biological sequence data. Non-sequential models such as SVMs or feed-forward neural networks are often used although they have no natural way of handling sequences of varying length. Recurrent…

Quantitative Methods · Quantitative Biology 2016-03-14 Søren Kaae Sønderby , Casper Kaae Sønderby , Henrik Nielsen , Ole Winther

This paper focuses on three critical problems on protein classification. Firstly, Carbohydrate-active enzyme (CAZyme) classification can help people to understand the properties of enzymes. However, one CAZyme may belong to several classes.…

Biomolecules · Quantitative Biology 2023-02-23 Zhuangwei Shi , Bo Li

Fully convolutional neural networks (FCN) have been shown to achieve state-of-the-art performance on the task of classifying time series sequences. We propose the augmentation of fully convolutional networks with long short term memory…

Machine Learning · Computer Science 2018-03-20 Fazle Karim , Somshubra Majumdar , Houshang Darabi , Shun Chen

Proteins perform essential biological functions, and accurate classification of their sequences is critical for understanding structure-function relationships, enzyme mechanisms, and molecular interactions. This study presents a deep…

Quantitative Methods · Quantitative Biology 2025-11-19 Pratik Chakraborty , Aryan Bhargava

Composed of amino acid chains that influence how they fold and thus dictating their function and features, proteins are a class of macromolecules that play a central role in major biological processes and are required for the structure,…

Quantitative Methods · Quantitative Biology 2022-07-15 Aaron Wang

This study presents a hybrid deep learning architecture that integrates LSTM, CNN, and an Attention mechanism to enhance the classification of web content based on text. Pretrained GloVe embeddings are used to represent words as dense…

Computation and Language · Computer Science 2025-12-29 Mykola Kuz , Ihor Lazarovych , Mykola Kozlenko , Mykola Pikuliak , Andrii Kvasniuk

Deep learning has become a powerful tool for medical image analysis; however, conventional Convolutional Neural Networks (CNNs) often fail to capture the fine-grained and complex features critical for accurate diagnosis. To address this…

Computer Vision and Pattern Recognition · Computer Science 2025-09-09 Zahid Ullah , Minki Hong , Tahir Mahmood , Jihie Kim

Identifying interactions between proteins is important to understand underlying biological processes. Extracting a protein-protein interaction (PPI) from the raw text is often very difficult. Previous supervised learning methods have used…

Quantitative Methods · Quantitative Biology 2018-08-10 Mahtab Ahmed , Jumayel Islam , Muhammad Rifayat Samee , Robert E. Mercer

Automated histopathological image analysis plays a vital role in computer-aided diagnosis of various diseases. Among developed algorithms, deep learning-based approaches have demonstrated excellent performance in multiple tasks, including…

Computer Vision and Pattern Recognition · Computer Science 2025-10-24 Nima Torbati , Anastasia Meshcheryakova , Ramona Woitek , Diana Mechtcheriakova , Amirreza Mahbod

Deep neural network (DNN) models have demonstrated impressive performance in various domains, yet their application in cognitive neuroscience is limited due to their lack of interpretability. In this study we employ two structurally…

Signal Processing · Electrical Eng. & Systems 2024-09-04 Murat Kucukosmanoglu , Javier O. Garcia , Justin Brooks , Kanika Bansal

Human action recognition is one of the challenging tasks in computer vision. The current action recognition methods use computationally expensive models for learning spatio-temporal dependencies of the action. Models utilizing RGB channels…

Computer Vision and Pattern Recognition · Computer Science 2022-06-07 Labina Shrestha , Shikha Dubey , Farrukh Olimov , Muhammad Aasim Rafique , Moongu Jeon

In this study, we present an advanced convolutional neural network (CNN) architecture for ship classification based on optical satellite imagery, which significantly enhances performance through the integration of a convolutional block…

Computer Vision and Pattern Recognition · Computer Science 2024-08-22 Ryan Donghan Kwon , Gangjoo Robin Nam , Jisoo Tak , Junseob Shin , Hyerin Cha , Seung Won Lee

In recent era prediction of enzyme class from an unknown protein is one of the challenging tasks in bioinformatics. Day to day the number of proteins is increases as result the prediction of enzyme class gives a new opportunity to…

Machine Learning · Computer Science 2019-01-21 Chhote Lal Prasad Gupta , Anand Bihari , Sudhakar Tripathi

Recent models for image processing are using the Convolutional neural network (CNN) which requires a pixel per pixel analysis of the input image. This method works well. However, it is time-consuming if we have large images. To increase the…

Machine Learning · Computer Science 2019-12-10 Mohamed Karim Belaid

Early and accurate detection of cardiac arrhythmias is vital for timely diagnosis and intervention. We propose a lightweight deep learning model combining 1D Convolutional Neural Networks (CNN), attention mechanisms, and Bidirectional Long…

Machine Learning · Computer Science 2025-11-13 Vamsikrishna Thota , Hardik Prajapati , Yuvraj Joshi , Shubhangi Rathi

In this work we propose a novel attention-based neural network model for the task of fine-grained entity type classification that unlike previously proposed models recursively composes representations of entity mention contexts. Our model…

Computation and Language · Computer Science 2016-04-20 Sonse Shimaoka , Pontus Stenetorp , Kentaro Inui , Sebastian Riedel

Accurate classification of multipartite entanglement in high-dimensional quantum systems is crucial for advancing quantum communication and information processing. However, conventional methods are resource-intensive, and even many…

Quantum Physics · Physics 2026-02-02 Qian Sun , Yuedong Sun , Yu Hu , Yihan Ma , Runqi Han , Nan Jiang
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