Related papers: Expected Density of Random Minimizers
In many estimation problems, e.g. linear and logistic regression, we wish to minimize an unknown objective given only unbiased samples of the objective function. Furthermore, we aim to achieve this using as few samples as possible. In the…
In computational biology, $k$-mers and edit distance are fundamental concepts. However, little is known about the metric space of all $k$-mers equipped with the edit distance. In this work, we explore the structure of the $k$-mer space by…
This study focuses on efficient schemes for enumerative coding of $\sigma$--ary sequences by mainly borrowing ideas from \"Oktem & Astola's \cite{Oktem99} hierarchical enumerative coding and Schalkwijk's \cite{Schalkwijk72} asymptotically…
The scheme of the sliding window is known in Information Theory, Computer Science, the problem of predicting and in stastistics. Let a source with unknown statistics generate some word $... x_{-1}x_{0}x_{1}x_{2}...$ in some alphabet $A$.…
We study the problem of finding global minimizers of $V(x):\mathbb{R}^d\rightarrow\mathbb{R}$ approximately via sampling from a probability distribution $\mu_{\sigma}$ with density $p_{\sigma}(x)=\dfrac{\exp(-V(x)/\sigma)}{\int_{\mathbb…
For positive integers $r,k_0,k_1,...,k_{r-1},$ the van der Waerden number $w(k_0,k_1,...,k_{r-1})$ is the least positive integer $n$ such that whenever $\{1,2,...,n\}$ is partitioned into $r$ sets $S_{0},S_{1},...,S_{r-1}$, there is some…
Sine-skewed circular distributions are identifiable and have easily-computable trigonometric moments and a simple random number generation algorithm, whereas they are known to have relatively low levels of asymmetry. This study proposes a…
String Kernel (SK) techniques, especially those using gapped $k$-mers as features (gk), have obtained great success in classifying sequences like DNA, protein, and text. However, the state-of-the-art gk-SK runs extremely slow when we…
In the range $\alpha$-majority query problem, we are given a sequence $S[1..n]$ and a fixed threshold $\alpha \in (0, 1)$, and are asked to preprocess $S$ such that, given a query range $[i..j]$, we can efficiently report the symbols that…
We present a study on how to effectively reduce the dimensions of the $k$-means clustering problem, so that provably accurate approximations are obtained. Four algorithms are presented, two \textit{feature selection} and two \textit{feature…
We study the maximum likelihood model in emission tomography and propose a new family of algorithms for its solution, called String-Averaging Expectation-Maximization (SAEM). In the String-Averaging algorithmic regime, the index set of all…
A sliding window algorithm receives a stream of symbols and has to output at each time instant a certain value which only depends on the last $n$ symbols. If the algorithm is randomized, then at each time instant it produces an incorrect…
As computer clusters are found to be highly effective for handling massive datasets, the design of efficient parallel algorithms for such a computing model is of great interest. We consider ({\alpha}, k)-minimal algorithms for such a…
We define the limiting density of a minor-closed family of simple graphs F to be the smallest number k such that every n-vertex graph in F has at most kn(1+o(1)) edges, and we investigate the set of numbers that can be limiting densities.…
A string $w$ is said to be a minimal unique substring (MUS) of a string $T$ if $w$ occurs exactly once in $T$, and any proper substring of $w$ occurs at least twice in $T$. It is known that the number of MUSs in a string $T$ of length $n$…
Dynamic Time Warping (DTW) is a widely used similarity measure for comparing strings that encode time series data, with applications to areas including bioinformatics, signature verification, and speech recognition. The standard…
Many problems in Computer Science can be abstracted to the following question: given a set of objects and rules respectively, which new objects can be produced? In the paper, we consider a succinct version of the question: given a set of…
A weakly admissible mesh (WAM) on a continuum real-valued domain is a sequence of discrete grids such that the discrete maximum norm of polynomials on the grid is comparable to the supremum norm of polynomials on the domain. The asymptotic…
Min-entropy sampling gives a bound on the min-entropy of a randomly chosen subset of a string, given a bound on the min-entropy of the whole string. K\"onig and Renner showed a min-entropy sampling theorem that holds relative to quantum…
Biclustering is the task of simultaneously clustering the rows and columns of the data matrix into different subgroups such that the rows and columns within a subgroup exhibit similar patterns. In this paper, we consider the case of…