Related papers: Expected Density of Random Minimizers

A string $w$ is said to be a minimal absent word (MAW) for a string $S$ if $w$ does not occur in $S$ and any proper substring of $w$ occurs in $S$. We focus on non-trivial MAWs which are of length at least 2. Finding such non-trivial MAWs…

We investigate the \emph{minimum weight cycle (MWC)} problem in the $\mathsf{CONGEST}$ model of distributed computing. For undirected weighted graphs, we design a randomized algorithm that achieves a $(k+1)$-approximation, for any…

A binary word is Sturmian if the occurrences of each letter are balanced, in the sense that in any two factors of the same length, the difference between the number of occurrences of the same letter is at most 1. In digital geometry,…

Let $P$ be a set of $m$ points in ${\mathbb R}^2$, let $\Sigma$ be a set of $n$ semi-algebraic sets of constant complexity in ${\mathbb R}^2$, let $(S,+)$ be a semigroup, and let $w: P \rightarrow S$ be a weight function on the points of…

Given a set of strings over a specified alphabet, identifying a median or consensus string that minimizes the total distance to all input strings is a fundamental data aggregation problem. When the Hamming distance is considered as the…

An average-case variant of the $k$-SUM conjecture asserts that finding $k$ numbers that sum to 0 in a list of $r$ random numbers, each of the order $r^k$, cannot be done in much less than $r^{\lceil k/2 \rceil}$ time. On the other hand, in…

A Random Access query to a string $T\in [0..\sigma)^n$ asks for the character $T[i]$ at a given position $i\in [0..n)$. In $O(n\log\sigma)$ bits of space, this fundamental task admits constant-time queries. While this is optimal in the…

The edit distance $ed(X,Y)$ of two strings $X,Y\in \Sigma^*$ is the minimum number of character edits (insertions, deletions, and substitutions) needed to transform $X$ into $Y$. Its weighted counterpart $ed^w(X,Y)$ minimizes the total cost…

Minwise hashing is a fundamental and one of the most successful hashing algorithm in the literature. Recent advances based on the idea of densification~\cite{Proc:OneHashLSH_ICML14,Proc:Shrivastava_UAI14} have shown that it is possible to…

The rate of randomness (or dimension) of a string $\sigma$ is the ratio $C(\sigma)/|\sigma|$ where $C(\sigma)$ is the Kolmogorov complexity of $\sigma$. While it is known that a single computable transformation cannot increase the rate of…

The analysis of biological sequencing data has been one of the biggest applications of string algorithms. The approaches used in many such applications are based on the analysis of k-mers, which are short fixed-length strings present in a…

Motivation: Building the histogram of occurrences of every $k$-symbol long substring of nucleotide data is a standard step in many bioinformatics applications, known under the name of $k$-mer counting. Its applications include developing de…

In this paper we consider two problems concerning string factorisation. Specifically given a string $w$ and an integer $k$ find a factorisation of $w$ where each factor has length bounded by $k$ and has the minimum (the FmD problem) or the…

We consider sets in $\mathbb R^N$ which minimise, for fixed volume, the sum of the perimeter and a non-local term given by the double integral of a kernel $g:\mathbb R^N\setminus\{0\}\to \mathbb R^+$. We establish some general existence and…

For a graph $G=(V,E)$ with $v(G)$ vertices the partition function of the random cluster model is defined by $$Z_G(q,w)=\sum_{A\subseteq E(G)}q^{k(A)}w^{|A|},$$ where $k(A)$ denotes the number of connected components of the graph $(V,A)$.…

We present a dynamic programming algorithm for selecting a representative subset of size $k$ from a given set with $n$ points such that the Riesz $s$-energy is near minimized. While NP-hard in general dimensions, the one-dimensional case…

This study proposes multivariate kernel density estimation by stagewise minimization algorithm based on $U$-divergence and a simple dictionary. The dictionary consists of an appropriate scalar bandwidth matrix and a part of the original…

Given a string $w$, another string $v$ is said to be a subsequence of $w$ if $v$ can be obtained from $w$ by removing some of its letters; on the other hand, $v$ is called an absent subsequence of $w$ if $v$ is not a subsequence of $w$. The…

Given a string $S$ of $n$ integers in $[0,\sigma)$, a range minimum query RMQ$(i, j)$ asks for the index of the smallest integer in $S[i \dots j]$. It is well known that the problem can be solved with a succinct data structure of size $2n +…

Let $\Sigma$ be a countable alphabet. For $r\geq 1$, an infinite sequence $s$ with characters from $\Sigma$ is called $r$-quasi-regular, if for each $\sigma\in\Sigma$ the ratio of the longest to shortest interval between consecutive…