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Extracting understanding from the growing ``sea'' of biological and socio-economic data is one of the most pressing scientific challenges facing us. Here, we introduce and validate an unsupervised method that is able to accurately extract…

Physics and Society · Physics 2009-11-13 M. Sales-Pardo , R. Guimera , A. Moreira , L. Amaral

Higher-order information is crucial for relational learning in many domains where relationships extend beyond pairwise interactions. Hypergraphs provide a natural framework for modeling such relationships, which has motivated recent…

Machine Learning · Computer Science 2025-02-21 Raphael Pellegrin , Lukas Fesser , Melanie Weber

Networks are a widely used and efficient paradigm to model real-world systems where basic units interact pairwise. Many body interactions are often at play, and cannot be modelled by resorting to binary exchanges. In this work, we consider…

Adaptation and Self-Organizing Systems · Physics 2020-06-03 Timoteo Carletti , Duccio Fanelli , Sara Nicoletti

Networks are fundamental for our understanding of complex systems. Interactions between individual nodes in networks generate network motifs - small recurrent patterns that can be considered the network's building-block components,…

Dynamical Systems · Mathematics 2022-09-14 Miri Adler , Ruslan Medzhitov

Many real-world networks describe systems in which interactions decay with the distance between nodes. Examples include systems constrained in real space such as transportation and communication networks, as well as systems constrained in…

Statistical Mechanics · Physics 2009-11-10 Shalev Itzkovitz , Uri Alon

Here we introduce simple structures for the analysis of complex hypergraphs, hypergraph animals. These structures are designed to describe the local node neighbourhoods of nodes in hypergraphs. We establish their relationships to lattice…

Molecular Networks · Quantitative Biology 2024-07-08 Michael P. H. Stumpf

Hypergraphs have been a recent focus of study in mathematical data science as a tool to understand complex networks with high-order connections. One question of particular relevance is how to leverage information carried in hypergraph…

Social and Information Networks · Computer Science 2024-05-09 Enzo Battistella , Sean English , Robert Green , Cliff Joslyn , Evgeniya Lagoda , Van Magnan , Audun Myers , Evan D. Nash , Michael Robinson

Hypergraphs provide a natural way of representing group relations, whose complexity motivates an extensive array of prior work to adopt some form of abstraction and simplification of higher-order interactions. However, the following…

Social and Information Networks · Computer Science 2020-05-14 Se-eun Yoon , Hyungseok Song , Kijung Shin , Yung Yi

Understanding human mobility is essential for applications ranging from urban planning to public health. Traditional mobility models such as flow networks and colocation matrices capture only pairwise interactions between discrete…

Social and Information Networks · Computer Science 2025-03-25 Prathyush Sambaturu , Bernardo Gutierrez , Moritz U. G. Kraemer

The network reconstruction task aims to estimate a complex system's structure from various data sources such as time series, snapshots, or interaction counts. Recent work has examined this problem in networks whose relationships involve…

Social and Information Networks · Computer Science 2023-12-05 Simon Lizotte , Jean-Gabriel Young , Antoine Allard

Networks can describe the structure of a wide variety of complex systems by specifying which pairs of entities in the system are connected. While such pairwise representations are flexible, they are not necessarily appropriate when the…

Social and Information Networks · Computer Science 2022-01-17 Jean-Gabriel Young , Giovanni Petri , Tiago P. Peixoto

A large number of complex systems, naturally emerging in various domains, are well described by directed networks, resulting in numerous interesting features that are absent from their undirected counterparts. Among these properties is a…

Physics and Society · Physics 2021-05-19 Joseph D. O'Brien , Kleber A. Oliveira , James P. Gleeson , Malbor Asllani

The lack of studying the complex organization of directed network usually limits to the understanding of underlying relationship between network structures and functions. Structural controllability and structural predictability, two…

Physics and Society · Physics 2022-03-31 Fei Jing , Chuang Liu , Jian-Liang Wu , Zi-Ke Zhang

We study the structure of the international trade hypergraph consisting of triangular hyperedges representing the exporter-importer-product relationship. Measuring the mean hyperdegree of the adjacent vertices, we first find its behaviors…

Physics and Society · Physics 2022-10-14 Sudo Yi , Deok-Sun Lee

We reveal a hierarchical, multilayer organization of finite components -- i.e., tendrils and tubes -- around the giant connected components in directed networks and propose efficient algorithms allowing one to uncover the entire…

Disordered Systems and Neural Networks · Physics 2017-02-22 G. Timár , A. V. Goltsev , S. N. Dorogovtsev , J. F. F. Mendes

A directed hypergraph (dihypergraph) consists of a set of vertices and a set of hyperarcs, where each hyperarc is partitioned into a head and a tail. Directed hypergraphs are useful in many applications, including the study of chemical…

Combinatorics · Mathematics 2026-04-14 Catherine Greenhill , Tamás Makai

All types of networks arise as intricate combinations of dyadic building blocks formed by pairs of vertices. In directed networks, the dyadic patterns are entirely determined by reciprocity, i.e. the tendency to form, or to avoid, mutual…

Data Analysis, Statistics and Probability · Physics 2014-01-14 Tiziano Squartini , Francesco Picciolo , Franco Ruzzenenti , Diego Garlaschelli

Hypergraphs naturally represent group interactions, which are omnipresent in many domains: collaborations of researchers, co-purchases of items, and joint interactions of proteins, to name a few. In this work, we propose tools for answering…

Social and Information Networks · Computer Science 2023-10-25 Geon Lee , Seokbum Yoon , Jihoon Ko , Hyunju Kim , Kijung Shin

We propose a novel structure, the data-sharing graph, for characterizing sharing patterns in large-scale data distribution systems. We analyze this structure in two such systems and uncover small-world patterns for data-sharing…

Networking and Internet Architecture · Computer Science 2007-05-23 Adriana Iamnitchi , Matei Ripeanu , Ian Foster

The richness of many complex systems stems from the interactions among their components. The higher-order nature of these interactions, involving many units at once, and their temporal dynamics constitute crucial properties that shape the…

Physics and Society · Physics 2024-07-29 Marco Mancastroppa , Iacopo Iacopini , Giovanni Petri , Alain Barrat
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