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Related papers: MultiOrg: A Multi-rater Organoid-detection Dataset

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Obtaining large-scale medical data, annotated or unannotated, is challenging due to stringent privacy regulations and data protection policies. In addition, annotating medical images requires that domain experts manually delineate…

Computer Vision and Pattern Recognition · Computer Science 2025-05-16 Tushar Kataria , Shireen Y. Elhabian

Real-world applications of computer vision in the humanities require algorithms to be robust against artistic abstraction, peripheral objects, and subtle differences between fine-grained target classes. Existing datasets provide…

Computer Vision and Pattern Recognition · Computer Science 2025-07-14 Mathias Zinnen , Prathmesh Madhu , Inger Leemans , Peter Bell , Azhar Hussian , Hang Tran , Ali Hürriyetoğlu , Andreas Maier , Vincent Christlein

Registering CT images of the chest is a crucial step for several tasks such as disease progression tracking or surgical planning. It is also a challenging step because of the heterogeneous content of the human abdomen which implies complex…

Computer Vision and Pattern Recognition · Computer Science 2022-10-04 Samuel Joutard , Thomas Pheiffer , Chloe Audigier , Patrick Wohlfahrt , Reuben Dorent , Sebastien Piat , Tom Vercauteren , Marc Modat , Tommaso Mansi

The objective of Radiology Report Generation (RRG) is to automatically generate coherent textual analyses of diseases based on radiological images, thereby alleviating the workload of radiologists. Current AI-based methods for RRG primarily…

Computer Vision and Pattern Recognition · Computer Science 2024-11-21 Tiancheng Gu , Kaicheng Yang , Xiang An , Ziyong Feng , Dongnan Liu , Weidong Cai

There is a dire need for medical imaging datasets with accompanying annotations to perform downstream patient analysis. However, it is difficult to manually generate these annotations, due to the time-consuming nature, and the variability…

Image and Video Processing · Electrical Eng. & Systems 2024-06-21 Deepa Krishnaswamy , Vamsi Krishna Thiriveedhi , Cosmin Ciausu , David Clunie , Steve Pieper , Ron Kikinis , Andrey Fedorov

We present a novel approach for benchmarking and validating quantitative phase tomography (QPT) systems using three-dimensional microphantoms. These microphantoms, crafted from biological and imaging data, replicate the optical and…

This paper introduces MedTrinity-25M, a comprehensive, large-scale multimodal dataset for medicine, covering over 25 million images across 10 modalities with multigranular annotations for more than 65 diseases. These multigranular…

Computer Vision and Pattern Recognition · Computer Science 2025-07-11 Yunfei Xie , Ce Zhou , Lang Gao , Juncheng Wu , Xianhang Li , Hong-Yu Zhou , Sheng Liu , Lei Xing , James Zou , Cihang Xie , Yuyin Zhou

Annotating multiple organs in 3D medical images is time-consuming and costly. Meanwhile, there exist many single-organ datasets with one specific organ annotated. This paper investigates how to learn a multi-organ segmentation model…

Computer Vision and Pattern Recognition · Computer Science 2021-08-06 Shixiang Feng , Yuhang Zhou , Xiaoman Zhang , Ya Zhang , Yanfeng Wang

Multi-organ segmentation has extensive applications in many clinical applications. To segment multiple organs of interest, it is generally quite difficult to collect full annotations of all the organs on the same images, as some medical…

Computer Vision and Pattern Recognition · Computer Science 2020-08-18 Rui Huang , Yuanjie Zheng , Zhiqiang Hu , Shaoting Zhang , Hongsheng Li

Objective: Surgical data science is evolving into a research field that aims to observe everything occurring within and around the treatment process to provide situation-aware data-driven assistance. In the context of endoscopic video…

Computer Vision and Pattern Recognition · Computer Science 2018-10-22 S. Moccia , S. J. Wirkert , H. Kenngott , A. S. Vemuri , M. Apitz , B. Mayer , E. De Momi , L. S. Mattos , L. Maier-Hein

Uncertainty in medical image segmentation tasks, especially inter-rater variability, arising from differences in interpretations and annotations by various experts, presents a significant challenge in achieving consistent and reliable image…

Diagnosis based on medical images, such as X-ray images, often involves manual annotation of anatomical keypoints. However, this process involves significant human efforts and can thus be a bottleneck in the diagnostic process. To fully…

Computer Vision and Pattern Recognition · Computer Science 2024-05-07 Jinhee Kim , Taesung Kim , Taewoo Kim , Jaegul Choo , Dong-Wook Kim , Byungduk Ahn , In-Seok Song , Yoon-Ji Kim

CT reconstruction provides radiologists with images for diagnosis and treatment, yet current deep learning methods are typically limited to specific anatomies and datasets, hindering generalization ability to unseen anatomies and lesions.…

Image and Video Processing · Electrical Eng. & Systems 2025-10-31 Shaokai Wu , Yapan Guo , Yanbiao Ji , Jing Tong , Yuxiang Lu , Mei Li , Suizhi Huang , Yue Ding , Hongtao Lu

Dynamic full-field optical coherence tomography (D-FFOCT) has recently emerged as a label-free imaging tool, capable of resolving cell types and organelles within 3D live samples, whilst monitoring their activity at tens of milliseconds…

Organ segmentation is a fundamental task in medical imaging since it is useful for many clinical automation pipelines. However, some tasks do not require full segmentation. Instead, a classifier can identify the selected organ without…

Computer Vision and Pattern Recognition · Computer Science 2025-01-13 Halid Ziya Yerebakan , Yoshihisa Shinagawa , Gerardo Hermosillo Valadez

Multi-organ segmentation in medical images is a widely researched task and can save much manual efforts of clinicians in daily routines. Automating the organ segmentation process using deep learning (DL) is a promising solution and…

Image and Video Processing · Electrical Eng. & Systems 2024-03-07 Chang Liu , Fuxin Fan , Annette Schwarz , Andreas Maier

In recent years, "U-shaped" neural networks featuring encoder and decoder structures have gained popularity in the field of medical image segmentation. Various variants of this model have been developed. Nevertheless, the evaluation of…

Image and Video Processing · Electrical Eng. & Systems 2023-06-02 Qi Ye , Lihua Guo

Quantitative organ assessment is an essential step in automated abdominal disease diagnosis and treatment planning. Artificial intelligence (AI) has shown great potential to automatize this process. However, most existing AI algorithms rely…

The main challenges of Optical Music Recognition (OMR) come from the nature of written music, its complexity and the difficulty of finding an appropriate data representation. This paper provides a first look at DoReMi, an OMR dataset that…

Information Retrieval · Computer Science 2021-07-19 Elona Shatri , György Fazekas

Automatic localization and segmentation of organs-at-risk (OAR) in CT are essential pre-processing steps in medical image analysis tasks, such as radiation therapy planning. For instance, the segmentation of OAR surrounding tumors enables…

Computer Vision and Pattern Recognition · Computer Science 2022-03-02 Fernando Navarro , Guido Sasahara , Suprosanna Shit , Ivan Ezhov , Jan C. Peeken , Stephanie E. Combs , Bjoern H. Menze