Related papers: MAFin: Motif Detection in Multiple Alignment Files
Mass spectra, which are agglomerations of ionized fragments from targeted molecules, play a crucial role across various fields for the identification of molecular structures. A prevalent analysis method involves spectral library…
Over the past few years, the YOLO series of models has emerged as one of the dominant methodologies in the realm of object detection. Many studies have advanced these baseline models by modifying their architectures, enhancing data quality,…
Modelling complex line emission in the interstellar medium (ISM) is a degenerate, high-dimensional problem. Here, we present McFine, a tool for automated multi-component fitting of emission lines with complex hyperfine structure, in a fully…
Algorithms that detect covariance between pairs of columns in multiple sequence alignments are commonly employed to predict functionally important residues and structural contacts. However, the assumption that co-variance only occurs…
Ortholog detection (OD) is a critical step for comparative genomic analysis of protein-coding sequences. In this paper, we begin with a comprehensive comparison of four popular, methodologically diverse OD methods: MultiParanoid, Blat,…
Multi-modality image fusion (MMIF) aims to integrate complementary information from different modalities into a single fused image to represent the imaging scene and facilitate downstream visual tasks comprehensively. In recent years,…
Fruit harvesting poses a significant labor and financial burden for the industry, highlighting the critical need for advancements in robotic harvesting solutions. Machine vision-based fruit detection has been recognized as a crucial…
We present GAAF, a Generalised Automatic Anatomy Finder, for the identification of generic anatomical locations in 3D CT scans. GAAF is an end-to-end pipeline, with dedicated modules for data pre-processing, model training, and inference.…
The recent breakthrough of AlphaFold3 in modeling complex biomolecular interactions, including those between proteins and ligands, nucleotides, or metal ions, creates new opportunities for protein design. In so-called inverse protein…
Feature pyramids are widely exploited in many detectors to solve the scale variation problem for object detection. In this paper, we first investigate the Feature Pyramid Network (FPN) architectures and briefly categorize them into three…
Flow matching (FM) trains a time-dependent vector field that transports samples from a simple prior to a complex data distribution. However, for high-dimensional images, each training sample supervises only a single trajectory and…
We propose Pullback Flow Matching (PFM), a novel framework for generative modeling on data manifolds. Unlike existing methods that assume or learn restrictive closed-form manifold mappings for training Riemannian Flow Matching (RFM) models,…
Due to the rise in antimicrobial resistance, identifying novel compounds with antibiotic potential is crucial for combatting this global health issue. However, traditional drug development methods are costly and inefficient. Recognizing the…
The main challenge of Multiple Object Tracking (MOT) is the efficiency in associating indefinite number of objects between video frames. Standard motion estimators used in tracking, e.g., Long Short Term Memory (LSTM), only deal with single…
Integration of transcriptomic and metabolomic data improves functional interpretation of disease-related metabolomic phenotypes, and facilitates discovery of putative metabolite biomarkers and gene targets. For this reason, these data are…
Time Series Motif Discovery (TSMD) refers to the task of identifying patterns that occur multiple times (possibly with minor variations) in a time series. All existing methods for TSMD have one or more of the following limitations: they…
In this paper we present a new machine learning workflow with unsupervised learning techniques to identify domains within atomic force microscopy images obtained from polymer films. The goal of the workflow is to identify the spatial…
Deep neural network (DNN) models have recently obtained state-of-the-art prediction accuracy for the transcription factor binding (TFBS) site classification task. However, it remains unclear how these approaches identify meaningful DNA…
Characterizing motif (i.e., locally connected subgraph patterns) statistics is important for understanding complex networks such as online social networks and communication networks. Previous work made the strong assumption that the graph…
Subsequence matching has appeared to be an ideal approach for solving many problems related to the fields of data mining and similarity retrieval. It has been shown that almost any data class (audio, image, biometrics, signals) is or can be…