Related papers: A Method to Generate Multi-interval Pairwise Compa…
Graphs are widely used for describing systems made up of many interacting components and for understanding the structure of their interactions. Various statistical models exist, which describe this structure as the result of a combination…
We initiate the study of a new parameterization of graph problems. In a multiple interval representation of a graph, each vertex is associated to at least one interval of the real line, with an edge between two vertices if and only if an…
Planar partial $3$-trees are subgraphs of those planar graphs obtained by repeatedly inserting a vertex of degree $3$ into a face. In this paper, we show that planar partial $3$-trees have $1$-string $B_1$-VPG representations, i.e.,…
Bipartite graphs model the relationship between two disjoint sets of objects. They have a wide range of applications and are often visualized as a 2-layered drawing, where each set of objects is visualized as a set of vertices (points) on…
Network graphs have become a popular tool to represent complex systems composed of many interacting subunits; especially in neuroscience, network graphs are increasingly used to represent and analyze functional interactions between neural…
A graph G is called well-indumatched if all of its maximal induced matchings have the same size. In this paper we characterize all well-indumatched trees. We provide a linear time algorithm to decide if a tree is well-indumatched or not.…
Tree representations of (sets of) symmetric binary relations, or equivalently edge-colored undirected graphs, are of central interest, e.g.\ in phylogenomics. In this context symbolic ultrametrics play a crucial role. Symbolic ultrametrics…
A double-arborescence is a treelike comparability graph with an all-adjacent vertex. In this paper, we first give a forbidden induced subgraph characterization of double-arborescences, where we prove that double-arborescences are precisely…
A consensus tree is a phylogenetic tree that synthesizes a given collection of phylogenetic trees, all of which share the same leaf labels but may have different topologies, typically obtained through bootstrapping. Our research focuses on…
An independent edge set of graph $G$ is a matching, and is maximal if it is not a proper subset of any other matching of $G$. The number of all the maximal matchings of $G$ is denoted by $\Psi(G)$. In this paper, an algorithm to count…
We present the first known pivot Gray code for spanning trees of complete graphs, listing all spanning trees such that consecutive trees differ by pivoting a single edge around a vertex. This pivot Gray code thus addresses an open problem…
The graph matching optimization problem is an essential component for many tasks in computer vision, such as bringing two deformable objects in correspondence. Naturally, a wide range of applicable algorithms have been proposed in the last…
A novel graph-to-tree conversion mechanism called the deep-tree generation (DTG) algorithm is first proposed to predict text data represented by graphs. The DTG method can generate a richer and more accurate representation for nodes (or…
Vertex deletion and edge deletion problems play a central role in Parameterized Complexity. Examples include classical problems like Feedback Vertex Set, Odd Cycle Transversal, and Chordal Deletion. Interestingly, the study of edge…
Orthologous genes, which arise through speciation, play a key role in comparative genomics and functional inference. In particular, graph-based methods allow for the inference of orthology estimates without prior knowledge of the underlying…
The cluster of a crossing in a graph drawing in the plane is the set of the four end-vertices of its two crossed edges. Two crossings are independent if their clusters do not intersect. In this paper, we prove that every plane graph with…
We consider the problem of constructing a bipartite graph whose degrees lie in prescribed intervals. Necessary and sufficient conditions for the existence of such graphs are well-known. However, existing realization algorithms suffer from…
We study noncrossing geometric graphs and their disjoint compatible geometric matchings. Given a cycle (a polygon) P we want to draw a set of pairwise disjoint straight-line edges with endpoints on the vertices of P such that these new…
We define and study a class of graphs, called 2-stab interval graphs (2SIG), with boxicity 2 which properly contains the class of interval graphs. A 2SIG is an axes-parallel rectangle intersection graph where the rectangles have unit height…
We introduce a graph partitioning problem motivated by computational topology and propose two algorithms that produce approximate solutions. Specifically, given a weighted, undirected graph $G$ and a positive integer $k$, we desire to find…