Related papers: A Method to Generate Multi-interval Pairwise Compa…
A topological graph is a graph drawn in the plane. A topological graph is $k$-plane, $k>0$, if each edge is crossed at most $k$ times. We study the problem of partitioning the edges of a $k$-plane graph such that each partite set forms a…
Recent studies have shown great promise in applying graph neural networks for multivariate time series forecasting, where the interactions of time series are described as a graph structure and the variables are represented as the graph…
For a connected graph, a vertex separator is a set of vertices whose removal creates at least two components. A vertex separator $S$ is minimal if it contains no other separator as a strict subset and a minimum vertex separator is a minimal…
It has been known since 1991 that the problem of recognizing grid intersection graphs is NP-complete. Here we use a modified argument of the above result to show that even if we restrict to the class of unit grid intersection graphs…
Phylogenetic networks are a generalization of phylogenetic trees that allow for the representation of non-treelike evolutionary events, like recombination, hybridization, or lateral gene transfer. In this paper, we present and study a new…
Leaf powers and pairwise compatibility graphs were introduced over twenty years ago as simplified graph models for phylogenetic trees. Despite significant research, several properties of these graph classes remain poorly understood. In this…
We present a simple linear-time algorithm that finds a spanning tree $T$ of a given $2$-edge-connected graph $G$ such that each vertex $v$ of $T$ has degree at most $\lceil \frac{\deg_G(v)}{2}\rceil + 1$.
One of the biggest huddles faced by researchers studying algorithms for massive graphs is the lack of large input graphs that are essential for the development and test of the graph algorithms. This paper proposes two efficient and highly…
Visibility Graph (VG) transforms time series into graphs, facilitating signal processing by advanced graph data mining algorithms. In this paper, based on the classic Limited Penetrable Visibility Graph (LPVG) method, we propose a novel…
In this paper, we explore the design and analysis of regular bipartite graphs motivated by their application in low-density parity-check (LDPC) codes specifically with constrained girth and in the high-rate regime. We focus on the relation…
We develop a time-optimal $O(mn^2)$-time algorithm to construct the subtree prune-regraft (SPR) graph on a collection of m phylogenetic trees with n leaves. This improves on the previous bound of $O(mn^3)$. Such graphs are used to better…
The graph is one of the most widely used mathematical structures in engineering and science because of its representational power and inherent ability to demonstrate the relationship between objects. The objective of this work is to…
The graph retrieval problem is to search in a large corpus of graphs for ones that are most similar to a query graph. A common consideration for scoring similarity is the maximum common subgraph (MCS) between the query and corpus graphs,…
In recent years, machine learning and deep learning approaches such as artificial neural networks have gained in popularity for the resolution of automatic puzzle resolution problems. Indeed, these methods are able to extract high-level…
Large scale real-world network data such as social and information networks are ubiquitous. The study of such social and information networks seeks to find patterns and explain their emergence through tractable models. In most networks, and…
The vertex-random graphs called proximity catch digraphs (PCDs) have been introduced recently and have applications in pattern recognition and spatial pattern analysis. A PCD is a random directed graph (i.e., digraph) which is constructed…
Given a Poisson process on a bounded interval, its random geometric graph is the graph whose vertices are the points of the Poisson process and edges exist between two points if and only if their distance is less than a fixed given…
Graph matching is a challenging problem with very important applications in a wide range of fields, from image and video analysis to biological and biomedical problems. We propose a robust graph matching algorithm inspired in…
Generating graphs that are similar to real ones is an open problem, while the similarity notion is quite elusive and hard to formalize. In this paper, we focus on sparse digraphs and propose SDG, an algorithm that aims at generating graphs…
It was recently shown \cite{STV} that satisfiability is polynomially solvable when the incidence graph is an interval bipartite graph (an interval graph turned into a bipartite graph by omitting all edges within each partite set). Here we…