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The solutions to certain nested recursions, such as Conolly's C(n) = C(n-C(n-1))+C(n-1-C(n-2)), with initial conditions C(1)=1, C(2)=2, have a well-established combinatorial interpretation in terms of counting leaves in an infinite binary…
Congruence modular and congruence distributive varieties can be characterized by the existence of sequences of Gumm and J\'onsson terms, respectively. Such sequences have variable lengths, in general. It is immediate from the above…
The dominant approach to sequence generation is to produce a sequence in some predefined order, e.g. left to right. In contrast, we propose a more general model that can generate the output sequence by inserting tokens in any arbitrary…
We consider the reconciliation problem, in which the task is to find a mapping of a gene tree into a species tree, so as to maximize the likelihood of such fitting, given the available data. We describe a model for the evolution of the…
Trees corresponding to $\Lambda$- and $\Xi$-$n$-coalescents can be both quite similar and fundamentally different compared to bifurcating tree models based on Kingman's $n$-coalescent. This has consequences for inference of a well-fitting…
We investigate the origin of the color-magnitude relation (CMR) observed in cluster galaxies by using a combination of a cosmological N-body simulation of a cluster of galaxies and a semi-analytic model of galaxy formation. The departure of…
Sequence to sequence (SEQ2SEQ) models often lack diversity in their generated translations. This can be attributed to the limitation of SEQ2SEQ models in capturing lexical and syntactic variations in a parallel corpus resulting from…
In this paper, we study the weighted difference substitutions from geometrical views. First, we give the geometric meanings of the weighted difference substitutions, and introduce the concept of convergence of the sequence of substitution…
Convex clustering refers, for given $\left\{x_1, \dots, x_n\right\} \subset \mathbb{R}^p$, to the minimization of \begin{eqnarray*} u(\gamma) & = & \underset{u_1, \dots, u_n }{\arg\min}\;\sum_{i=1}^{n}{\lVert x_i - u_i \rVert^2} + \gamma…
We study the validity of congruence inclusions of the form $ \alpha ( \beta \circ \alpha \gamma \circ \beta \circ \dotsc \circ \alpha \gamma \circ \beta ) \subseteq \alpha \beta \circ \alpha \gamma \circ \alpha \beta \circ \dots$ in…
The problem of multimodal clustering arises whenever the data are gathered with several physically different sensors. Observations from different modalities are not necessarily aligned in the sense there there is no obvious way to associate…
The commuting variety of matrices over a given field is a well-studied object in linear algebra and algebraic geometry. As a set, it consists of all pairs of square matrices with entries in that field that commute with one another. In this…
Next-generation sequencing technologies now constitute a method of choice to measure gene expression. Data to analyze are read counts, commonly modeled using Negative Binomial distributions. A relevant issue associated with this…
We study non-uniform percolation in a two-dimensional cluster growth model with multiple seeds. With increasing concentration of seeds, the percolation threshold is found to increase monotonically, while the exponents for correlation…
A combinatorial rectangle may be viewed as a matrix whose entries are all +-1. The discrepancy of an m by n matrix is the maximum among the absolute values of its m row sums and n column sums. In this paper, we investigate combinatorial…
Matrices are two-dimensional data structures allowing one to conceptually organize information. For example, adjacency matrices are useful to store the links of a network; correlation matrices are simple ways to arrange gene co-expression…
[Abridged] We assemble a sample of 45 intermediate X-ray luminosity galaxy clusters at low redshifts using SDSS data to conduct a comprehensive investigation into the photometric variation of red sequence modal galaxy colours with…
In recent work, Bacher and de la Harpe define and study conjugacy growth series for finitary permutation groups. In two subsequent papers, Cotron, Dicks, and Fleming study the congruence properties of some of these series. We define a new…
The way for performing multiple sequence alignment is based on the criterion of the maximum scored information content computed from a weight matrix, but it is possible to have two or more alignments to have the same highest score leading…
This paper gives the recursion formula for mixed multiplicities of maximal degrees with respect to joint reductions of ideals, which is one of important results in the mixed multiplicity theory. Using this result, we give consequences on…