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PySR is an open-source library for practical symbolic regression, a type of machine learning which aims to discover human-interpretable symbolic models. PySR was developed to democratize and popularize symbolic regression for the sciences,…

Instrumentation and Methods for Astrophysics · Physics 2023-05-08 Miles Cranmer

Bridging continuous perceptual signals and discrete symbolic reasoning is a fundamental challenge in AI systems that must operate under uncertainty. We present a neuro-symbolic framework that explicitly models and propagates uncertainty…

Artificial Intelligence · Computer Science 2025-11-19 Jiahao Wu , Shengwen Yu

The development of smart systems (i.e., systems enhanced with AI components) has thrived thanks to the rapid advancements in neural networks (NNs). A wide range of libraries and frameworks have consequently emerged to support NN design and…

Machine Learning · Computer Science 2026-05-19 Nadia Daoudi , Ivan Alfonso , Jordi Cabot

Adaptive behavior requires the brain to transition between distinct contexts while maintaining representations of prior experience. The ability to reconfigure neural representations without erasing previously acquired knowledge is central…

Neurons and Cognition · Quantitative Biology 2026-05-12 Qianqian Shi , Yue Che , Faqiang Liu , Hongyi Li , Mingkun Xu , Sandra Reinert , Pieter M. Goltstein , Rong Zhao , Luping Shi

Recent years have seen a rapid expansion of the model space explored in statistical phylogenetics, emphasizing the need for new approaches to statistical model representation and software development. Clear communication and representation…

Populations and Evolution · Quantitative Biology 2013-12-10 Sebastian Höhna , Tracy A. Heath , Bastien Boussau , Michael J. Landis , Fredrik Ronquist , John P. Huelsenbeck

Affective Computing is a rapidly growing field spurred by advancements in artificial intelligence, but often, held back by the inability to translate psychological theories of emotion into tractable computational models. To address this, we…

Artificial Intelligence · Computer Science 2020-08-03 Desmond C. Ong , Harold Soh , Jamil Zaki , Noah D. Goodman

Many recent studies have shown that the perception of speech can be decoded from brain signals and subsequently reconstructed as continuous language. However, there is a lack of neurological basis for how the semantic information embedded…

Computation and Language · Computer Science 2026-04-14 Congchi Yin , Ziyi Ye , Piji Li

To facilitate flexible and efficient structural bioinformatics analyses, new functionality for three-dimensional structure processing and analysis has been introduced into PyCogent -- a popular feature-rich framework for sequence-based…

Biomolecules · Quantitative Biology 2018-10-01 Marcin Cieslik , Zygmunt Derewenda , Cameron Mura

Prior-data fitted networks (PFNs) were recently proposed as a new paradigm for machine learning. Instead of training the network to an observed training set, a fixed model is pre-trained offline on small, simulated training sets from a…

Machine Learning · Statistics 2023-05-19 Thomas Nagler

The pursuit of automated scientific discovery has fueled progress from symbolic logic to modern AI, forging new frontiers in reasoning and pattern recognition. Transformers function as potential systems, where every possible relationship…

Artificial Intelligence · Computer Science 2025-01-15 Markus J. Buehler

Although individual neurons and neural populations exhibit the phenomenon of representational drift, perceptual and behavioral outputs of many neural circuits can remain stable across time scales over which representational drift is…

Prediction accuracy and model explainability are the two most important objectives when developing machine learning algorithms to solve real-world problems. The neural networks are known to possess good prediction performance, but lack of…

Machine Learning · Statistics 2019-09-04 Zebin Yang , Aijun Zhang , Agus Sudjianto

Time-series forecasting is central to many scientific and industrial domains, such as energy systems, climate modeling, finance, and retail. While forecasting methods have evolved from classical statistical models to automated, and neural…

The Python ecosystem represents a global, data rich, technology-enabled network. By analyzing Python's dependency network, its top 14 most imported libraries and cPython (or core Python) libraries, this research finds clear evidence the…

Social and Information Networks · Computer Science 2022-01-19 Thomas Pike , Robert Colter , Mark Bailey , Jackie Kazil , John Speed Meyers

PGMax is an open-source Python package for (a) easily specifying discrete Probabilistic Graphical Models (PGMs) as factor graphs; and (b) automatically running efficient and scalable loopy belief propagation (LBP) in JAX. PGMax supports…

Python has become a popular programming language because of its excellent programmability. Many modern software packages utilize Python for high-level algorithm design and depend on native libraries written in C/C++/Fortran for efficient…

Programming Languages · Computer Science 2021-07-02 Jialiang Tan , Yu Chen , Zhenming Liu , Bin Ren , Shuaiwen Leon Song , Xipeng Shen , Xu Liu

Call graph construction is the foundation of inter-procedural static analysis. PYCG is the state-of-the-art approach for constructing call graphs for Python programs. Unfortunately, PyCG does not scale to large programs when adapted to…

Software Engineering · Computer Science 2024-09-11 Kaifeng Huang , Yixuan Yan , Bihuan Chen , Zixin Tao , Xin Peng

Undirected graphical models are a widely used class of probabilistic models in machine learning that capture prior knowledge or putative pairwise interactions between variables. Those interactions are encoded in a graph for pairwise…

Statistics Theory · Mathematics 2025-03-21 Grégoire Sergeant-Perthuis , Toby St Clere Smithe , Léo Boitel

Backpropagation has enabled modern deep learning but is difficult to realize as an online, fully distributed hardware learning system due to global error propagation, phase separation, and heavy reliance on centralized memory. Predictive…

Neural and Evolutionary Computing · Computer Science 2026-05-05 Timothy Oh

The accurate prediction of biological features from genomic data is paramount for precision medicine and sustainable agriculture. For decades, neural network models have been widely popular in fields like computer vision, astrophysics and…

Genomics · Quantitative Biology 2022-03-15 Zhaoyi Zhang , Songyang Cheng , Claudia Solis-Lemus