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This paper presents Tyche, a Python library to facilitate probabilistic reasoning in uncertain worlds through the construction, querying, and learning of belief models. Tyche uses aleatoric description logic (ADL), which provides…

Artificial Intelligence · Computer Science 2022-08-23 Padraig X. Lamont

We present PYHESSIAN, a new scalable framework that enables fast computation of Hessian (i.e., second-order derivative) information for deep neural networks. PYHESSIAN enables fast computations of the top Hessian eigenvalues, the Hessian…

Machine Learning · Computer Science 2021-04-21 Zhewei Yao , Amir Gholami , Kurt Keutzer , Michael Mahoney

Biological data sets are often high-dimensional, noisy, and governed by complex interactions among sparse signals. This poses major challenges for interpretability and reliable feature selection. Tasks such as identifying motif interactions…

Methodology · Statistics 2025-11-20 Marta S. Lemanczyk , Lucas Kock , Johanna Schlimme , Nadja Klein , Bernhard Y. Renard

The adaptive processing of structured data is a long-standing research topic in machine learning that investigates how to automatically learn a mapping from a structured input to outputs of various nature. Recently, there has been an…

Machine Learning · Computer Science 2022-02-28 Federico Errica

There is a growing concern about typically opaque decision-making with high-performance machine learning algorithms. Providing an explanation of the reasoning process in domain-specific terms can be crucial for adoption in risk-sensitive…

Computer Vision and Pattern Recognition · Computer Science 2022-11-28 Aditya Chattopadhyay , Stewart Slocum , Benjamin D. Haeffele , Rene Vidal , Donald Geman

Virtual screening aims to find desirable compounds from chemical library by using computational methods. For this purpose with machine learning, model outputs that can be interpreted as predictive probability will be beneficial, in that a…

Machine Learning · Computer Science 2020-07-02 Doyeong Hwang , Grace Lee , Hanseok Jo , Seyoul Yoon , Seongok Ryu

Tangled Program Graph (TPG) is a reinforcement learning technique based on genetic programming concepts. On state-of-the-art learning environments, TPGs have been shown to offer comparable competence with Deep Neural Networks (DNNs), for a…

Neural and Evolutionary Computing · Computer Science 2020-12-16 Karol Desnos , Nicolas Sourbier , Pierre-Yves Raumer , Olivier Gesny , Maxime Pelcat

Machine learning algorithms have achieved superhuman performance in specific complex domains. However, learning online from few examples and compositional learning for efficient generalization across domains remain elusive. In humans, such…

Neurons and Cognition · Quantitative Biology 2024-11-11 V. A. Aksyuk

Modern deep learning frameworks provide imperative, eager execution programming interfaces embedded in Python to provide a productive development experience. However, deep learning practitioners sometimes need to capture and transform…

Machine Learning · Computer Science 2022-03-08 James K. Reed , Zachary DeVito , Horace He , Ansley Ussery , Jason Ansel

Graph domain adaptation has emerged as a promising approach to facilitate knowledge transfer across different domains. Recently, numerous models have been proposed to enhance their generalization capabilities in this field. However, there…

Machine Learning · Computer Science 2025-03-14 Zhen Zhang , Meihan Liu , Bingsheng He

The theory of random vector functional link network (RVFLN) has provided a breakthrough in the design of neural networks (NNs) since it conveys solid theoretical justification of randomized learning. Existing works in RVFLN are hardly…

Neural and Evolutionary Computing · Computer Science 2018-02-06 Mahardhika Pratama , Plamen P. Angelov , Edwin Lughofer

Backpropagation has rapidly become the workhorse credit assignment algorithm for modern deep learning methods. Recently, modified forms of predictive coding (PC), an algorithm with origins in computational neuroscience, have been shown to…

Neural and Evolutionary Computing · Computer Science 2023-04-07 Umais Zahid , Qinghai Guo , Zafeirios Fountas

Phage display is a powerful laboratory technique used to study the interactions between proteins and other molecules, whether other proteins, peptides, DNA or RNA. The under-utilisation of this data in conjunction with deep learning models…

Populations and Evolution · Quantitative Biology 2026-01-08 Ilann Amiaud-Plachy , Michael Blank , Oliver Bent , Sebastien Boyer

Classical Bayesian persuasion assumes that senders fully understand how receivers form beliefs and make decisions--an assumption that rarely holds when receivers possess private information or exhibit non-Bayesian behavior. In this paper,…

Systems and Control · Electrical Eng. & Systems 2025-11-11 Heeseung Bang , Andreas A. Malikopoulos

This paper describes the autofeat Python library, which provides scikit-learn style linear regression and classification models with automated feature engineering and selection capabilities. Complex non-linear machine learning models, such…

Machine Learning · Computer Science 2020-02-27 Franziska Horn , Robert Pack , Michael Rieger

In this article, we review a class of neuro-mimetic computational models that we place under the label of spiking predictive coding. Specifically, we review the general framework of predictive processing in the context of neurons that emit…

Neurons and Cognition · Quantitative Biology 2024-09-10 Antony W. N'dri , William Gebhardt , Céline Teulière , Fleur Zeldenrust , Rajesh P. N. Rao , Jochen Triesch , Alexander Ororbia

Unexpected stimuli induce "error" or "surprise" signals in the brain. The theory of predictive coding promises to explain these observations in terms of Bayesian inference by suggesting that the cortex implements variational inference in a…

Machine Learning · Statistics 2024-10-18 Eli Sennesh , Hao Wu , Tommaso Salvatori

A representation of the cause-effect mechanism is needed to enable artificial intelligence to represent how the world works. Bayesian Networks (BNs) have proven to be an effective and versatile tool for this task. BNs require constructing a…

Artificial Intelligence · Computer Science 2026-03-18 Joverlyn Gaudillo , Nicole Astrologo , Fabio Stella , Enzo Acerbi , Francesco Canonaco

Machine learning algorithms often assume that training samples are independent. When data points are connected by a network, the induced dependency between samples is both a challenge, reducing effective sample size, and an opportunity to…

Machine Learning · Statistics 2025-09-22 Tiffany M. Tang , Elizaveta Levina , Ji Zhu

A large amount of data is produced every second from modern information systems such as mobile devices, the world wide web, Internet of Things, social media, etc. Analysis and mining of this massive data requires a lot of advanced tools and…

Machine Learning · Computer Science 2020-01-13 Rising Odegua , Festus Ikpotokin