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Transformer-based models trained on large and general purpose datasets consisting of molecular strings have recently emerged as a powerful tool for successfully modeling various structure-property relations. Inspired by this success, we…

Biomolecules · Quantitative Biology 2025-04-02 Jerret Ross , Brian Belgodere , Samuel C. Hoffman , Vijil Chenthamarakshan , Jiri Navratil , Youssef Mroueh , Payel Das

We propose a self-supervised shared encoder model that achieves strong results on several visual, language and multimodal benchmarks while being data, memory and run-time efficient. We make three key contributions. First, in contrast to…

Computer Vision and Pattern Recognition · Computer Science 2023-04-13 Rakesh Chada , Zhaoheng Zheng , Pradeep Natarajan

Accurate brain tumor segmentation from Magnetic Resonance Imaging (MRI) is desirable to joint learning of multimodal images. However, in clinical practice, it is not always possible to acquire a complete set of MRIs, and the problem of…

Image and Video Processing · Electrical Eng. & Systems 2022-08-05 Yao Zhang , Nanjun He , Jiawei Yang , Yuexiang Li , Dong Wei , Yawen Huang , Yang Zhang , Zhiqiang He , Yefeng Zheng

Molecule representation learning (MRL) methods aim to embed molecules into a real vector space. However, existing SMILES-based (Simplified Molecular-Input Line-Entry System) or GNN-based (Graph Neural Networks) MRL methods either take…

Machine Learning · Computer Science 2021-09-23 Hongwei Wang , Weijiang Li , Xiaomeng Jin , Kyunghyun Cho , Heng Ji , Jiawei Han , Martin D. Burke

Molecular property prediction constitutes a cornerstone of drug discovery and materials science, necessitating models capable of disentangling complex structure-property relationships across diverse molecular modalities. Existing approaches…

Machine Learning · Computer Science 2026-03-24 Long Xu , Junping Guo , Jianbo Zhao , Jianbo Lu , Yuzhong Peng

Existing machine learning methods for molecular (e.g., gene) embeddings are restricted to specific tasks or data modalities, limiting their effectiveness within narrow domains. As a result, they fail to capture the full breadth of gene…

Multimodal datasets contain an enormous amount of relational information, which grows exponentially with the introduction of new modalities. Learning representations in such a scenario is inherently complex due to the presence of multiple…

Machine Learning · Computer Science 2019-09-24 Devanshu Arya , Stevan Rudinac , Marcel Worring

We introduce Transfusion, a recipe for training a multi-modal model over discrete and continuous data. Transfusion combines the language modeling loss function (next token prediction) with diffusion to train a single transformer over…

Artificial Intelligence · Computer Science 2024-08-21 Chunting Zhou , Lili Yu , Arun Babu , Kushal Tirumala , Michihiro Yasunaga , Leonid Shamis , Jacob Kahn , Xuezhe Ma , Luke Zettlemoyer , Omer Levy

Organic reaction, the foundation of modern chemical industry, is crucial for new material development and drug discovery. However, deciphering reaction mechanisms and modeling multi-molecular relationships remain formidable challenges due…

Chemical Physics · Physics 2025-08-13 Lirong Wu , Junjie Wang , Zhifeng Gao , Xiaohong Ji , Rong Zhu , Xinyu Li , Linfeng Zhang , Guolin Ke , Weinan E

Multi-modal learning relates information across observation modalities of the same physical phenomenon to leverage complementary information. Most multi-modal machine learning methods require that all the modalities used for training are…

Machine Learning · Computer Science 2021-03-10 Vandana Rajan , Alessio Brutti , Andrea Cavallaro

Multimodal emotion recognition in conversation (MERC) requires representations that effectively integrate signals from multiple modalities. These signals include modality-specific cues, information shared across modalities, and interactions…

Machine Learning · Computer Science 2026-01-22 Anh-Tuan Mai , Cam-Van Thi Nguyen , Duc-Trong Le

Simultaneously using multimodal inputs from multiple sensors to train segmentors is intuitively advantageous but practically challenging. A key challenge is unimodal bias, where multimodal segmentors over rely on certain modalities, causing…

Computer Vision and Pattern Recognition · Computer Science 2025-05-19 Xu Zheng , Haiwei Xue , Jialei Chen , Yibo Yan , Lutao Jiang , Yuanhuiyi Lyu , Kailun Yang , Linfeng Zhang , Xuming Hu

Biological sequences encode fundamental instructions for the building blocks of life, in the form of DNA, RNA, and proteins. Modeling these sequences is key to understand disease mechanisms and is an active research area in computational…

We present BioLangFusion, a simple approach for integrating pre-trained DNA, mRNA, and protein language models into unified molecular representations. Motivated by the central dogma of molecular biology (information flow from gene to…

Machine Learning · Computer Science 2025-06-11 Amina Mollaysa , Artem Moskale , Pushpak Pati , Tommaso Mansi , Mangal Prakash , Rui Liao

Accurate beam prediction is essential for mitigating signalling overhead and latency in integrated sensing and communication-enabled massive multi-input multi-output systems. With the aid of multimodal learning, the prediction accuracy can…

Signal Processing · Electrical Eng. & Systems 2026-05-15 Zijian Zheng , Wenqiang Yi , Hyundong Shin , Arumugam Nallanathan

Emotion recognition is a topic of significant interest in assistive robotics due to the need to equip robots with the ability to comprehend human behavior, facilitating their effective interaction in our society. Consequently, efficient and…

Human-Computer Interaction · Computer Science 2023-12-05 Rutherford Agbeshi Patamia , Paulo E. Santos , Kingsley Nketia Acheampong , Favour Ekong , Kwabena Sarpong , She Kun

Encoder transformer models compress information from all tokens in a sequence into a single [CLS] token to represent global context. This approach risks diluting fine-grained or hierarchical features, leading to information loss in…

Computation and Language · Computer Science 2025-09-23 Asif Shahriar , Rifat Shahriyar , M Saifur Rahman

We present a new pre-training strategy called M$^{3}$3D ($\underline{M}$ulti-$\underline{M}$odal $\underline{M}$asked $\underline{3D}$) built based on Multi-modal masked autoencoders that can leverage 3D priors and learned cross-modal…

Computer Vision and Pattern Recognition · Computer Science 2023-09-28 Muhammad Abdullah Jamal , Omid Mohareri

Large-scale molecular representation methods have revolutionized applications in material science, such as drug discovery, chemical modeling, and material design. With the rise of transformers, models now learn representations directly from…

Computational Engineering, Finance, and Science · Computer Science 2024-10-17 Indra Priyadarsini , Seiji Takeda , Lisa Hamada , Emilio Vital Brazil , Eduardo Soares , Hajime Shinohara

In this paper, we introduce a novel visual representation learning which relies on a handful of adaptively learned tokens, and which is applicable to both image and video understanding tasks. Instead of relying on hand-designed splitting…

Computer Vision and Pattern Recognition · Computer Science 2022-04-05 Michael S. Ryoo , AJ Piergiovanni , Anurag Arnab , Mostafa Dehghani , Anelia Angelova