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Learning representations of molecular structures using deep learning is a fundamental problem in molecular property prediction tasks. Molecules inherently exist in the real world as three-dimensional structures; furthermore, they are not…

Machine Learning · Computer Science 2024-01-22 Daiki Koge , Naoaki Ono , Shigehiko Kanaya

Drug discovery can be viewed as a combinatorial search over an immense chemical space, motivating the development of deep generative models for de novo molecular design. Among these, GPT-based molecular language models (MLM) have shown…

Machine Learning · Computer Science 2026-02-02 Qianwei Yang , Dong Xu , Zhangfan Yang , Sisi Yuan , Zexuan Zhu , Jianqiang Li , Junkai Ji

Low-cost cross-modal representation learning is crucial for deriving semantic representations across diverse modalities such as text, audio, images, and video. Traditional approaches typically depend on large specialized models trained from…

Machine Learning · Computer Science 2024-09-10 Bilal Faye , Hanane Azzag , Mustapha Lebbah , Djamel Bouchaffra

Molecular shape and geometry dictate key biophysical recognition processes, yet many graph neural networks disregard 3D information for molecular property prediction. Here, we propose a new contrastive-learning procedure for graph neural…

Machine Learning · Computer Science 2022-11-07 Austin Atsango , Nathaniel L. Diamant , Ziqing Lu , Tommaso Biancalani , Gabriele Scalia , Kangway V. Chuang

Learning representations of multimodal data that are both informative and robust to missing modalities at test time remains a challenging problem due to the inherent heterogeneity of data obtained from different channels. To address it, we…

Machine Learning · Computer Science 2022-11-21 Petra Poklukar , Miguel Vasco , Hang Yin , Francisco S. Melo , Ana Paiva , Danica Kragic

In this work we introduce an Autoencoder for molecular conformations. Our proposed model converts the discrete spatial arrangements of atoms in a given molecular graph (conformation) into and from a continuous fixed-sized latent…

Machine Learning · Computer Science 2021-01-06 Robin Winter , Frank Noé , Djork-Arné Clevert

Structure-based molecular ML (SBML) models can be highly sensitive to input geometries and give predictions with large variance. We present an approach to mitigate the challenge of selecting conformations for such models by generating…

Machine Learning · Computer Science 2023-11-08 Michael Maser , Natasa Tagasovska , Jae Hyeon Lee , Andrew Watkins

Multi-modal affective computing aims to automatically recognize and interpret human attitudes from diverse data sources such as images and text, thereby enhancing human-computer interaction and emotion understanding. Existing approaches…

Computation and Language · Computer Science 2025-06-10 Yuanhe Tian , Pengsen Cheng , Guoqing Jin , Lei Zhang , Yan Song

Large language models (LLMs) are increasingly recognized as powerful tools for scientific discovery, particularly in molecular science. A fundamental requirement for these models is the ability to accurately understand molecular structures,…

Machine Learning · Computer Science 2025-05-23 Yunhui Jang , Jaehyung Kim , Sungsoo Ahn

The ability to learn robust multi-modality representation has played a critical role in the development of RGBT tracking. However, the regular fusion paradigm and the invariable tracking template remain restrictive to the feature…

Computer Vision and Pattern Recognition · Computer Science 2025-08-26 Ruichao Hou , Boyue Xu , Tongwei Ren , Gangshan Wu

Human language is a rich multimodal signal consisting of spoken words, facial expressions, body gestures, and vocal intonations. Learning representations for these spoken utterances is a complex research problem due to the presence of…

Computation and Language · Computer Science 2020-03-02 Paul Pu Liang , Yao Chong Lim , Yao-Hung Hubert Tsai , Ruslan Salakhutdinov , Louis-Philippe Morency

An emerging solution for explaining Transformer-based models is to use vector-based analysis on how the representations are formed. However, providing a faithful vector-based explanation for a multi-layer model could be challenging in three…

Computation and Language · Computer Science 2023-06-06 Ali Modarressi , Mohsen Fayyaz , Ehsan Aghazadeh , Yadollah Yaghoobzadeh , Mohammad Taher Pilehvar

Multimodal MRI offers complementary information for brain tumor segmentation, but clinical scans often lack one or more modalities, which degrades segmentation performance. In this paper, we propose UniME (Uni-Encoder Meets Multi-Encoders),…

Computer Vision and Pattern Recognition · Computer Science 2026-04-27 Peibo Song , Xiaotian Xue , Jinshuo Zhang , Zihao Wang , Jinhua Liu , Shujun Fu , Fangxun Bao , Si Yong Yeo

There are many ways to represent a molecule as input to a machine learning model and each is associated with loss and retention of certain kinds of information. In the interest of preserving three-dimensional spatial information, including…

Machine Learning · Computer Science 2019-12-11 Jocelyn Sunseri , David Ryan Koes

Machine learning (ML) offers considerable promise for the design of new molecules and materials. In real-world applications, the design problem is often domain-specific, and suffers from insufficient data, particularly labeled data, for ML…

Chemical Physics · Physics 2025-02-04 Ming Han , Ge Sun , Juan J. de Pablo

Due to the complex nature of human emotions and the diversity of emotion representation methods in humans, emotion recognition is a challenging field. In this research, three input modalities, namely text, audio (speech), and video, are…

Artificial Intelligence · Computer Science 2024-02-13 Minoo Shayaninasab , Bagher Babaali

The graph structure is a commonly used data storage mode, and it turns out that the low-dimensional embedded representation of nodes in the graph is extremely useful in various typical tasks, such as node classification, link prediction ,…

Social and Information Networks · Computer Science 2020-08-03 Xing Li , Wei Wei , Xiangnan Feng , Xue Liu , Zhiming Zheng

Multimodal sentiment analysis is a core research area that studies speaker sentiment expressed from the language, visual, and acoustic modalities. The central challenge in multimodal learning involves inferring joint representations that…

Machine Learning · Computer Science 2020-03-02 Hai Pham , Paul Pu Liang , Thomas Manzini , Louis-Philippe Morency , Barnabas Poczos

An important challenge in vision-based action recognition is the embedding of spatiotemporal features with two or more heterogeneous modalities into a single feature. In this study, we propose a new 3D deformable transformer for action…

Computer Vision and Pattern Recognition · Computer Science 2023-08-21 Sangwon Kim , Dasom Ahn , Byoung Chul Ko

Learning multimodal representations is a fundamentally complex research problem due to the presence of multiple heterogeneous sources of information. Although the presence of multiple modalities provides additional valuable information,…

Machine Learning · Computer Science 2019-05-15 Yao-Hung Hubert Tsai , Paul Pu Liang , Amir Zadeh , Louis-Philippe Morency , Ruslan Salakhutdinov
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