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Understanding the evolution of a set of genes or species is a fundamental problem in evolutionary biology. The problem we study here takes as input a set of trees describing {possibly discordant} evolutionary scenarios for a given set of…

Data Structures and Algorithms · Computer Science 2019-07-10 Cedric Chauve , Mark Jones , Manuel Lafond , Céline Scornavacca , Mathias Weller

Generalized linear and additive models are very efficient regression tools but the selection of relevant terms becomes difficult if higher order interactions are needed. In contrast, tree-based methods also known as recursive partitioning…

Methodology · Statistics 2015-04-21 Gerhard Tutz , Moritz Berger

We study the design of efficient algorithms for combinatorial pattern matching. More concretely, we study algorithms for tree matching, string matching, and string matching in compressed texts.

Data Structures and Algorithms · Computer Science 2007-09-03 Philip Bille

Random forests have long been considered as powerful model ensembles in machine learning. By training multiple decision trees, whose diversity is fostered through data and feature subsampling, the resulting random forest can lead to more…

Artificial Intelligence · Computer Science 2021-08-12 Gilles Audemard , Steve Bellart , Louenas Bounia , Frédéric Koriche , Jean-Marie Lagniez , Pierre Marquis

The sorting problem is one of the most relevant problems in computer science. Within the scope of modern computer science it has been studied for more than 70 years. In spite of these facts, new sorting algorithms have been developed in…

Data Structures and Algorithms · Computer Science 2014-11-04 Luis A. A. Meira , Rogério H. B. de Lima

In this paper we introduce a variation on the multidimensional segment tree, formed by unifying different interpretations of the dimensionalities of the data structure. We give some new definitions to previously well-defined concepts that…

Computational Geometry · Computer Science 2013-02-28 David P. Wagner

Understanding predictions made by Machine Learning models is critical in many applications. In this work, we investigate the performance of two methods for explaining tree-based models- Tree Interpreter (TI) and SHapley Additive…

Artificial Intelligence · Computer Science 2020-10-15 Pulkit Sharma , Shezan Rohinton Mirzan , Apurva Bhandari , Anish Pimpley , Abhiram Eswaran , Soundar Srinivasan , Liqun Shao

Although regression trees were originally designed for large datasets, they can profitably be used on small datasets as well, including those from replicated or unreplicated complete factorial experiments. We show that in the latter…

Statistics Theory · Mathematics 2007-06-13 Wei-Yin Loh

The cellular tree classifier model addresses a fundamental problem in the design of classifiers for a parallel or distributed computing world: Given a data set, is it sufficient to apply a majority rule for classification, or shall one…

Machine Learning · Statistics 2013-06-26 Gérard Biau , Luc Devroye

Tree ensembles such as random forests and boosted trees are accurate but difficult to understand, debug and deploy. In this work, we provide the inTrees (interpretable trees) framework that extracts, measures, prunes and selects rules from…

Machine Learning · Computer Science 2014-08-26 Houtao Deng

Mechanistic interpretability aims to understand how neural networks generalize beyond their training data by reverse-engineering their internal structures. We introduce patterning as the dual problem: given a desired form of generalization,…

Machine Learning · Computer Science 2026-01-21 George Wang , Daniel Murfet

Neural networks and tree ensembles are state-of-the-art learners, each with its unique statistical and computational advantages. We aim to combine these advantages by introducing a new layer for neural networks, composed of an ensemble of…

Machine Learning · Computer Science 2020-07-14 Hussein Hazimeh , Natalia Ponomareva , Petros Mol , Zhenyu Tan , Rahul Mazumder

Tree Ensemble (TE) models, such as Gradient Boosted Trees, often achieve optimal performance on tabular datasets, yet their lack of transparency poses challenges for comprehending their decision logic. This paper introduces TE2Rules (Tree…

Machine Learning · Computer Science 2024-01-25 G Roshan Lal , Xiaotong Chen , Varun Mithal

The use of machine learning algorithms in finance, medicine, and criminal justice can deeply impact human lives. As a consequence, research into interpretable machine learning has rapidly grown in an attempt to better control and fix…

Machine Learning · Computer Science 2021-02-02 Thibaut Vidal , Toni Pacheco , Maximilian Schiffer

Many websites with an underlying database containing structured data provide the richest and most dense source of information relevant for topical data integration. The real data integration requires sustainable and reliable pattern…

Information Retrieval · Computer Science 2015-03-19 Z. Akbar , L. T. Handoko

Programming language processing (similar to natural language processing) is a hot research topic in the field of software engineering; it has also aroused growing interest in the artificial intelligence community. However, different from a…

Machine Learning · Computer Science 2015-12-09 Lili Mou , Ge Li , Lu Zhang , Tao Wang , Zhi Jin

Various natural language processing tasks are structured prediction problems where outputs are constructed with multiple interdependent decisions. Past work has shown that domain knowledge, framed as constraints over the output space, can…

Computation and Language · Computer Science 2020-06-03 Xingyuan Pan , Maitrey Mehta , Vivek Srikumar

Evolutionary mechanism in a self-organized system cause some functional changes that force to adapt new conformation of the interaction pattern between the components of that system. Measuring the structural differences one can retrace the…

Quantitative Methods · Quantitative Biology 2012-10-19 Anirban Banerjee

Latent tree learning(LTL) methods learn to parse sentences using only indirect supervision from a downstream task. Recent advances in latent tree learning have made it possible to recover moderately high quality tree structures by training…

Computation and Language · Computer Science 2019-09-24 Phu Mon Htut , Kyunghyun Cho , Samuel R. Bowman

Computing differences between tree-structured data is a critical but challenging problem in software analysis. In this paper, we propose a novel tree diffing approach called SatDiff, which reformulates the structural diffing problem into a…

Programming Languages · Computer Science 2024-04-09 Chuqin Geng , Haolin Ye , Yihan Zhang , Brigitte Pientka , Xujie Si