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Explainable Graph Neural Networks (GNNs) have been developed and applied to drug-protein binding prediction to identify the key chemical structures in a drug that have active interactions with the target proteins. However, the key…

Biomolecules · Quantitative Biology 2023-09-25 Yang Wang , Zanyu Shi , Timothy Richardson , Kun Huang , Pathum Weerawarna , Yijie Wang

Soybean leaf disease detection is critical for agricultural productivity but faces challenges due to visually similar symptoms and limited interpretability in conventional methods. While Convolutional Neural Networks (CNNs) excel in spatial…

Computer Vision and Pattern Recognition · Computer Science 2025-05-05 Md Abrar Jahin , Soudeep Shahriar , M. F. Mridha , Md. Jakir Hossen , Nilanjan Dey

Graph Neural Networks (GNNs) often struggle with heterophilic data, where connected nodes may have dissimilar labels, as they typically assume homophily and rely on local message passing. To address this, we propose creating alternative…

Machine Learning · Computer Science 2025-06-11 Victor M. Tenorio , Madeline Navarro , Samuel Rey , Santiago Segarra , Antonio G. Marques

This paper presents a novel graph-based deep learning model for tasks involving relations between two nodes (edge-centric tasks), where the focus lies on predicting relationships and interactions between pairs of nodes rather than node…

Machine Learning · Computer Science 2025-07-08 Eugenio Borzone , Leandro Di Persia , Matias Gerard

Conditional image generation is the task of generating diverse images using class label information. Although many conditional Generative Adversarial Networks (GAN) have shown realistic results, such methods consider pairwise relations…

Computer Vision and Pattern Recognition · Computer Science 2021-02-04 Minguk Kang , Jaesik Park

Heterogeneous Graph Neural Networks (HGNNs) have gained significant popularity in various heterogeneous graph learning tasks. However, most existing HGNNs rely on spatial domain-based methods to aggregate information, i.e., manually…

Machine Learning · Computer Science 2024-05-08 Mingguo He , Zhewei Wei , Shikun Feng , Zhengjie Huang , Weibin Li , Yu Sun , Dianhai Yu

Unsupervised domain adaptation (UDA) has shown remarkable results in bearing fault diagnosis under changing working conditions in recent years. However, most UDA methods do not consider the geometric structure of the data. Furthermore, the…

Systems and Control · Electrical Eng. & Systems 2021-12-14 Mohammadreza Ghorvei , Mohammadreza Kavianpour , Mohammad TH Beheshti , Amin Ramezani

Generating images from graph-structured inputs, such as scene graphs, is uniquely challenging due to the difficulty of aligning nodes and connections in graphs with objects and their relations in images. Most existing methods address this…

Computer Vision and Pattern Recognition · Computer Science 2022-11-22 Ling Yang , Zhilin Huang , Yang Song , Shenda Hong , Guohao Li , Wentao Zhang , Bin Cui , Bernard Ghanem , Ming-Hsuan Yang

Crop yield prediction is extremely challenging due to its dependence on multiple factors such as crop genotype, environmental factors, management practices, and their interactions. This paper presents a deep learning framework using…

Machine Learning · Computer Science 2020-01-28 Saeed Khaki , Lizhi Wang , Sotirios V. Archontoulis

Graph contrastive learning has emerged as a powerful tool for unsupervised graph representation learning. The key to the success of graph contrastive learning is to acquire high-quality positive and negative samples as contrasting pairs for…

Machine Learning · Computer Science 2023-05-19 Haoran Yang , Hongxu Chen , Sixiao Zhang , Xiangguo Sun , Qian Li , Xiangyu Zhao , Guandong Xu

The primary motivation of Image-to-Image Transformation is to convert an image of one domain to another domain. Most of the research has been focused on the task of image transformation for a set of pre-defined domains. Very few works are…

Computer Vision and Pattern Recognition · Computer Science 2019-01-14 Kishan Babu Kancharagunta , Shiv Ram Dubey

Graph Neural Networks (GNNs) have demonstrated remarkable efficacy in tackling a wide array of graph-related tasks across diverse domains. However, a significant challenge lies in their propensity to generate biased predictions,…

Machine Learning · Computer Science 2025-01-03 Abdullah Alchihabi , Yuhong Guo

Heterogeneous graphs (HGs) are composed of multiple types of nodes and edges, making it more effective in capturing the complex relational structures inherent in the real world. However, in real-world scenarios, labeled data is often…

Machine Learning · Computer Science 2025-08-20 Ruobing Jiang , Yacong Li , Haobing Liu , Yanwei Yu

Generative Adversarial Networks (GANs) have facilitated a new direction to tackle the image-to-image transformation problem. Different GANs use generator and discriminator networks with different losses in the objective function. Still…

Computer Vision and Pattern Recognition · Computer Science 2021-11-30 Kancharagunta Kishan Babu , Shiv Ram Dubey

Traditional change detection methods usually follow the image differencing, change feature extraction and classification framework, and their performance is limited by such simple image domain differencing and also the hand-crafted…

Computer Vision and Pattern Recognition · Computer Science 2020-03-17 Bin Hou , Qingjie Liu , Heng Wang , Yunhong Wang

Illuminating the interconnections between drugs and genes is an important topic in drug development and precision medicine. Currently, computational predictions of drug-gene interactions mainly focus on the binding interactions without…

Machine Learning · Computer Science 2022-05-13 Jiahua Rao , Shuangjia Zheng , Sijie Mai , Yuedong Yang

Accurate cell type annotation is a crucial step in analyzing single-cell RNA sequencing (scRNA-seq) data, which provides valuable insights into cellular heterogeneity. However, due to the high dimensionality and prevalence of zero elements…

Machine Learning · Computer Science 2025-08-14 Huifa Li , Jie Fu , Xinlin Zhuang , Haolin Yang , Xinpeng Ling , Tong Cheng , Haochen xue , Imran Razzak , Zhili Chen

Deep Convolutional Neural Network (DCNN) and Transformer have achieved remarkable successes in image recognition. However, their performance in fine-grained image recognition is still difficult to meet the requirements of actual needs. This…

Computer Vision and Pattern Recognition · Computer Science 2021-06-08 Chaorong Li , Malu Zhang , Wei Huang , Fengqing Qin , Anping Zeng , Yuanyuan Huang

Agriculture, as the cornerstone of human civilization, constantly seeks to integrate technology for enhanced productivity and sustainability. This paper introduces $\textit{Agri-GNN}$, a novel Genotypic-Topological Graph Neural Network…

Machine Learning · Computer Science 2023-10-23 Aditya Gupta , Asheesh Singh

The Gaussian graphical model is a widely used tool for learning gene regulatory networks with high-dimensional gene expression data. Most existing methods for Gaussian graphical models assume that the data are homogeneous, i.e., all samples…

Methodology · Statistics 2018-05-08 Bochao Jia , Faming Liang
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