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Background: The early stage of defect prediction in the software development life cycle can reduce testing effort and ensure the quality of software. Due to the lack of historical data within the same project, Cross-Project Defect…

Software Engineering · Computer Science 2021-05-18 Sourabh Pal

Inferencing Gene Regulatory Networks (GRNs) from gene expression data is a pivotal challenge in systems biology, and several innovative computational methods have been introduced. However, most of these studies have not considered the…

Quantitative Methods · Quantitative Biology 2025-01-10 Jiaqi Xiong , Nan Yin , Shiyang Liang , Haoyang Li , Yingxu Wang , Duo Ai , Fang Pan , Jingjie Wang

Currently, image generation and synthesis have remarkably progressed with generative models. Despite photo-realistic results, intrinsic discrepancies are still observed in the frequency domain. The spectral discrepancy appeared not only in…

Computer Vision and Pattern Recognition · Computer Science 2024-03-11 Seokjun Lee , Seung-Won Jung , Hyunseok Seo

Most scene graph parsers use a two-stage pipeline to detect visual relationships: the first stage detects entities, and the second predicts the predicate for each entity pair using a softmax distribution. We find that such pipelines,…

Computer Vision and Pattern Recognition · Computer Science 2019-08-20 Ji Zhang , Kevin J. Shih , Ahmed Elgammal , Andrew Tao , Bryan Catanzaro

The task of weed detection is an essential element of precision agriculture since accurate species identification allows a farmer to selectively apply herbicides and fits into sustainable agriculture crop management. This paper proposes a…

Computer Vision and Pattern Recognition · Computer Science 2025-11-20 Pandiyaraju V , Abishek Karthik , Sreya Mynampati , Poovarasan L , D. Saraswathi

Graph neural networks frequently encounter significant performance degradation when confronted with structural noise or non-homophilous topologies. To address these systemic vulnerabilities, we present AdvSynGNN, a comprehensive…

Machine Learning · Computer Science 2026-04-14 Rong Fu , Muge Qi , Chunlei Meng , Shuo Yin , Kun Liu , Zhaolu Kang , Simon Fong

Graph neural networks (GNNs) model nonlinear representations in graph data with applications in distributed agent coordination, control, and planning among others. Current GNN architectures assume ideal scenarios and ignore link…

Signal Processing · Electrical Eng. & Systems 2021-09-01 Zhan Gao , Elvin Isufi , Alejandro Ribeiro

Leveraging domain knowledge including fingerprints and functional groups in molecular representation learning is crucial for chemical property prediction and drug discovery. When modeling the relation between graph structure and molecular…

Machine Learning · Computer Science 2021-03-25 Yin Fang , Haihong Yang , Xiang Zhuang , Xin Shao , Xiaohui Fan , Huajun Chen

Convolutional neural networks (CNNs) have long been the cornerstone of target detection, but they are often limited by limited receptive fields, which hinders their ability to capture global contextual information. We re-examined the…

Computer Vision and Pattern Recognition · Computer Science 2025-08-05 Haolin Wei

Identification of genes that initiate cell anomalies and cause cancer in humans is among the important fields in the oncology researches. The mutation and development of anomalies in these genes are then transferred to other genes in the…

Molecular Networks · Quantitative Biology 2023-03-03 Mostafa Akhavan Safar , Babak Teimourpour , Abbas Nozari-Dalini

Crystal graph neural networks predict materials properties by propagating information through local atomic environments. In conventional crystal graph convolutional neural networks (CGCNNs), this propagation depth is increased by stacking…

Materials Science · Physics 2026-05-18 Satadeep Bhattacharjee

Signed graphs model complex relationships through positive and negative edges, with widespread real-world applications. Given the sensitive nature of such data, selective removal mechanisms have become essential for privacy protection.…

Machine Learning · Computer Science 2025-11-19 Junpeng Zhao , Lin Li , Kaixi Hu , Kaize Shi , Jingling Yuan

Graph anomaly detection aims to identify unusual patterns in graph-based data, with wide applications in fields such as web security and financial fraud detection. Existing methods typically rely on contrastive learning, assuming that a…

Machine Learning · Computer Science 2025-05-26 Di Jin , Jingyi Cao , Xiaobao Wang , Bingdao Feng , Dongxiao He , Longbiao Wang , Jianwu Dang

With the increasing computation of training graph neural networks (GNNs) on large-scale graphs, graph condensation (GC) has emerged as a promising solution to synthesize a compact, substitute graph of the large-scale original graph for…

Machine Learning · Computer Science 2025-10-09 Xinyi Gao , Yayong Li , Tong Chen , Guanhua Ye , Wentao Zhang , Hongzhi Yin

Quantifying and predicting the long-term impact of scientific writings or individual scholars has important implications for many policy decisions, such as funding proposal evaluation and identifying emerging research fields. In this work,…

Social and Information Networks · Computer Science 2020-03-27 Fan Zhou , Xovee Xu , Ce Li , Goce Trajcevski , Ting Zhong , Kunpeng Zhang

Link prediction is a classical problem in graph analysis with many practical applications. For directed graphs, recently developed deep learning approaches typically analyze node similarities through contrastive learning and aggregate…

Machine Learning · Computer Science 2025-06-26 Yuyang Zhang , Xu Shen , Yu Xie , Ka-Chun Wong , Weidun Xie , Chengbin Peng

Graph-level representations are critical in various real-world applications, such as predicting the properties of molecules. But in practice, precise graph annotations are generally very expensive and time-consuming. To address this issue,…

Machine Learning · Computer Science 2022-07-26 Shuai Lin , Pan Zhou , Zi-Yuan Hu , Shuojia Wang , Ruihui Zhao , Yefeng Zheng , Liang Lin , Eric Xing , Xiaodan Liang

Information diffusion prediction is a fundamental task for understanding the information propagation process. It has wide applications in such as misinformation spreading prediction and malicious account detection. Previous works either…

Social and Information Networks · Computer Science 2020-06-11 Chunyuan Yuan , Jiacheng Li , Wei Zhou , Yijun Lu , Xiaodan Zhang , Songlin Hu

Graph Neural Networks (GNNs) have been widely used to learn representations on graphs and tackle many real-world problems from a wide range of domains. In this paper we propose wsGAT, an extension of the Graph Attention Network (GAT)…

Social and Information Networks · Computer Science 2022-02-01 Marco Grassia , Giuseppe Mangioni

Drug-drug interactions (DDIs) are a major concern in clinical practice, as they can lead to reduced therapeutic efficacy or severe adverse effects. Traditional computational approaches often struggle to capture the complex relationships…

Machine Learning · Computer Science 2025-08-27 Hongbo Liu , Siyi Li , Zheng Yu
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