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Deep learning, particularly with the advancement of Large Language Models, has transformed biomolecular modeling, with protein language models such as ESM inspiring emerging RNA language models such as RiNALMo. Recent work has begun…

Biomolecules · Quantitative Biology 2026-05-18 Taehan Kim , Sangdae Nam

Sparse autoencoders (SAEs) are used to disentangle the dense, polysemantic internal representations of large language models (LLMs) into interpretable, monosemantic concepts. However, standard $\ell_1$-regularized SAEs suffer from feature…

Machine Learning · Computer Science 2026-05-08 Faris Chaudhry , Keisuke Yano , Anthea Monod

SAEs have recently been employed as a promising unsupervised approach for understanding the representations of layers of Large Language Models (LLMs). However, with the growth in model size and complexity, training SAEs is computationally…

Computation and Language · Computer Science 2025-09-23 Davide Ghilardi , Federico Belotti , Marco Molinari , Tao Ma , Matteo Palmonari

Sparse dictionary learning (and, in particular, sparse autoencoders) attempts to learn a set of human-understandable concepts that can explain variation on an abstract space. A basic limitation of this approach is that it neither exploits…

Computation and Language · Computer Science 2025-06-03 Mark Muchane , Sean Richardson , Kiho Park , Victor Veitch

Large language model (LLM) based agents are increasingly used to tackle software engineering tasks that require multi-step reasoning and code modification, demonstrating promising yet limited performance. However, most existing LLM agents…

Artificial Intelligence · Computer Science 2025-11-11 Hiroaki Hayashi , Bo Pang , Wenting Zhao , Ye Liu , Akash Gokul , Srijan Bansal , Caiming Xiong , Semih Yavuz , Yingbo Zhou

With the integration of image modality, the semantic space of multimodal large language models (MLLMs) is more complex than text-only models, making their interpretability more challenging and their alignment less stable, particularly…

Machine Learning · Computer Science 2025-06-18 Hantao Lou , Changye Li , Jiaming Ji , Yaodong Yang

The cosine similarity between a large language model's hidden activations before and after Supervised Fine-Tuning (SFT) remains very high. This, at first glance, suggests that SFT leaves the model's activation geometry largely undisturbed.…

Artificial Intelligence · Computer Science 2026-05-13 Ruhaan Chopra

The fidelity with which neural networks can now generate content such as music presents a scientific opportunity: these systems appear to have learned implicit theories of such content's structure through statistical learning alone. This…

Sound · Computer Science 2026-03-03 Nikhil Singh , Manuel Cherep , Pattie Maes

Artistic style transfer in generative models remains a significant challenge, as existing methods often introduce style only via model fine-tuning, additional adapters, or prompt engineering, all of which can be computationally expensive…

Computer Vision and Pattern Recognition · Computer Science 2025-12-23 Raina Panda , Daniel Fein , Arpita Singhal , Mark Fiore , Maneesh Agrawala , Matyas Bohacek

There is growing interest in leveraging mechanistic interpretability and controllability to better understand and influence the internal dynamics of large language models (LLMs). However, current methods face fundamental challenges in…

Computation and Language · Computer Science 2025-12-02 Ruben Härle , Felix Friedrich , Manuel Brack , Stephan Wäldchen , Björn Deiseroth , Patrick Schramowski , Kristian Kersting

Sparse autoencoders (SAEs) \citep{bricken2023monosemanticity,gao2024scalingevaluatingsparseautoencoders} rely on dictionary learning to extract interpretable features from neural networks at scale in an unsupervised manner, with…

Machine Learning · Computer Science 2025-05-02 Hans Peter , Anders Søgaard

Software vulnerabilities are a primary threat to modern infrastructure. While static analysis and Graph Neural Networks have long served as the foundation for vulnerability detection, the emergence of Large Language Models (LLMs) has…

Cryptography and Security · Computer Science 2026-04-22 Zhengyang Shan , Xu Qian , Jiayun Xin , Minghui Xu , Yue Zhang , Zhen Yang , Hao Wu , Xiuzhen Cheng

In this work, we demonstrate that affine mappings between residual streams of language models is a cheap way to effectively transfer represented features between models. We apply this technique to transfer the weights of Sparse Autoencoders…

Computation and Language · Computer Science 2025-11-04 Alan Chen , Jack Merullo , Alessandro Stolfo , Ellie Pavlick

Fine-grained steering of language model outputs is essential for safety and reliability. Prompting and finetuning are widely used to achieve these goals, but interpretability researchers have proposed a variety of representation-based…

Computation and Language · Computer Science 2025-03-05 Zhengxuan Wu , Aryaman Arora , Atticus Geiger , Zheng Wang , Jing Huang , Dan Jurafsky , Christopher D. Manning , Christopher Potts

Evaluating relevance in large-scale search systems is fundamentally constrained by the governance gap between nuanced, resource-constrained human oversight and the high-throughput requirements of production systems. While traditional…

Sparse autoencoders (SAEs) have proven effective for extracting monosemantic features from large language models (LLMs), yet these features are typically identified in isolation. However, broad evidence suggests that LLMs capture the…

Artificial Intelligence · Computer Science 2026-02-13 Yifan Luo , Yang Zhan , Jiedong Jiang , Tianyang Liu , Mingrui Wu , Zhennan Zhou , Bin Dong

Large language models (LLMs) excel at handling human queries, but they can occasionally generate flawed or unexpected responses. Understanding their internal states is crucial for understanding their successes, diagnosing their failures,…

Computation and Language · Computer Science 2025-02-24 Xuansheng Wu , Jiayi Yuan , Wenlin Yao , Xiaoming Zhai , Ninghao Liu

Neural Audio Codecs (NACs) are widely adopted in modern speech systems, yet how they encode linguistic and paralinguistic information remains unclear. Improving the interpretability of NAC representations is critical for understanding and…

Sparse Autoencoders (SAEs) extract interpretable features from Large Language Models, but standard variants enforce non-negativity, forcing separate latents for diametrically opposed concepts (e.g., "pressure too high" vs. "pressure too…

Sparse autoencoders are a promising new approach for decomposing language model activations for interpretation and control. They have been applied successfully to vision transformer image encoders and to small-scale diffusion models.…

Machine Learning · Computer Science 2025-07-14 Stepan Shabalin , Ayush Panda , Dmitrii Kharlapenko , Abdur Raheem Ali , Yixiong Hao , Arthur Conmy
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