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We propose coding techniques that limit the length of homopolymers runs, ensure the GC-content constraint, and are capable of correcting a single edit error in strands of nucleotides in DNA-based data storage systems. In particular, for…

Information Theory · Computer Science 2020-01-10 Tuan Thanh Nguyen , Kui Cai , Kees A. Schouhamer Immink , Han Mao Kiah

Many existing coverless steganography methods establish a mapping relationship between cover images and hidden data. There exists an issue that the number of images stored in the database grows exponentially as the steganographic capacity…

Cryptography and Security · Computer Science 2024-01-23 Jiajun Liu , Lina Tan , Zhili Zhou , Yi Li , Peng Chen

DNA has many valuable characteristics that make it suitable for a long-term storage medium, in particular its durability and high information density. DNA can be stored safely for hundreds of years with virtually no degradation, in contrast…

Quantitative Methods · Quantitative Biology 2022-05-31 Jamie J. Alnasir , Thomas Heinis , Louis Carteron

DNA storage has emerged as an important area of research. The reliability of DNA storage system depends on designing the DNA strings (called DNA codes) that are sufficiently dissimilar. In this work, we introduce DNA codes that satisfy a…

Information Theory · Computer Science 2022-11-28 Krishna Gopal Benerjee , Sourav Deb , Manish K Gupta

The exponential growth in data generation and large-scale data analysis creates an unprecedented need for inexpensive, low-latency, and high-density information storage. This need has motivated significant research into multi-level memory…

DNA methylation (DNAme) is a critical component of the epigenetic regulatory machinery and aberrations in DNAme patterns occur in many diseases, such as cancer. Mapping and understanding DNAme profiles offers considerable promise for…

DNA has been discussed as a potential medium for data storage. Potentially it could be denser, could consume less energy, and could be more durable than conventional storage media such as hard drives, solid-state storage, and optical media.…

Emerging Technologies · Computer Science 2023-07-04 Arnav Solanki , Zak Griffin , Purab Ranjan Sutradhar , Amlan Ganguly , Marc D. Riedel

Composite DNA is a recent method to increase the base alphabet size in DNA-based data storage.This paper models synthesizing and sequencing of composite DNA and introduces coding techniques to correct substitutions, losses of entire…

Information Theory · Computer Science 2025-10-29 Frederik Walter , Omer Sabary , Antonia Wachter-Zeh , Eitan Yaakobi

In the wake of the swift evolution of technologies such as the Internet of Things (IoT), the global data landscape undergoes an exponential surge, propelling DNA storage into the spotlight as a prospective medium for contemporary cloud…

Machine Learning · Computer Science 2024-09-20 Wenfeng Wu , Luping Xiang , Qiang Liu , Kun Yang

DNA is a promising medium for digital information storage for its exceptional density and durability. While prior studies advanced coding theory, workflow design, and simulation tools, challenges such as synthesis costs, sequencing errors,…

Emerging Technologies · Computer Science 2025-10-06 Rakesh Thakur , Lavanya Singh , Yashika , Manomay Bundawala , Aruna Kumar

We study the problem of coded information retrieval for block-structured data, motivated by DNA-based storage systems where a database is partitioned into multiple files that must each be recoverable as an atomic unit. We initiate and…

Information Theory · Computer Science 2026-03-19 Daniella Bar-Lev

We propose a new coding scheme, called the delayed coding (DC) scheme, for channels with insertion, deletion, and substitution (IDS) errors. The proposed scheme employs delayed encoding and non-iterative detection and decoding strategies to…

Information Theory · Computer Science 2022-05-25 Ryo Shibata , Hiroyuki Yashima

Decoding sequences that stem from multiple transmissions of a codeword over an insertion, deletion, and substitution channel is a critical component of efficient deoxyribonucleic acid (DNA) data storage systems. In this paper, we consider a…

Information Theory · Computer Science 2020-10-30 Andreas Lenz , Issam Maarouf , Lorenz Welter , Antonia Wachter-Zeh , Eirik Rosnes , Alexandre Graell i Amat

DNA storage is a promising archival data storage solution to today's big data problem. A DNA storage system encodes and stores digital data with synthetic DNA sequences and decodes DNA sequences back to digital data via sequencing. For…

Emerging Technologies · Computer Science 2024-03-25 Yixun Wei , Bingzhe Li , David Du

Erasure codes have been widely considered a promising solution to enhance data reliability at low storage costs. However, in modern geo-distributed storage systems, erasure codes may incur high data access latency as they require data…

Information Theory · Computer Science 2020-12-08 Kaiyang Liu , Jun Peng , Jingrong Wang , Jianping Pan

Due to the vital role of security in online communications and this fact that attackers are developing their tools, modernizing the security tools is an essential. The efficiency of crypto systems has been proven after years, however one…

Cryptography and Security · Computer Science 2020-04-01 Mahboubeh Nazari , Sousan Tarahomi , Sobhan Aliabady

Data hiding is the procedure of encoding desired information into a certain types of cover media (e.g. images) to resist potential noises for data recovery, while ensuring the embedded image has few perceptual perturbations. Recently, with…

Computer Vision and Pattern Recognition · Computer Science 2022-10-18 Honglei Zhang , Hu Wang , Yuanzhouhan Cao , Chunhua Shen , Yidong Li

Securing image data in IoT networks and other insecure information channels is a matter of critical concern. This paper presents a new image encryption scheme using DNA encoding, snake permutation and chaotic substitution techniques that…

Cryptography and Security · Computer Science 2025-03-13 Waleed Ahmed Farooqui , Jawad Ahmad , Nadeem Kureshi , Fawad Ahmed , Aizaz Ahmad Khattak , Muhammad Shahbaz Khan

Due to their sequential nature, traditional DNA synthesis methods are expensive in terms of time and resources. They also fabricate multiple copies of the same strand, introducing redundancy. This redundancy can be leveraged to enhance the…

Information Theory · Computer Science 2025-10-29 Frederik Walter , Yonatan Yehezkeally

Recent studies have explored DNA-based algorithms for IoT security and image encryption. A similar encryption algorithm was proposed by Al-Husainy et. al. in 2021 Recently, Al-Husainy et al.in 2021, proposed an encryption algorithm based on…

Cryptography and Security · Computer Science 2025-03-11 Yash Makwana , Anupama Panigrahi , Saibal K. Pal