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We introduce a biomedical information extraction (IE) pipeline that extracts biological relationships from text and demonstrate that its components, such as named entity recognition (NER) and relation extraction (RE), outperform…

Machine Learning · Computer Science 2020-11-13 Jupinder Parmar , William Koehler , Martin Bringmann , Katharina Sophia Volz , Berk Kapicioglu

This study presents a bibliometric analysis of industry--academia collaboration in artificial intelligence (AI) research, focusing on papers from two major international conferences, AAAI and IJCAI, from 2010 to 2023. Most previous studies…

Digital Libraries · Computer Science 2025-10-03 Kazuhiro Yamauchi , Marie Katsurai

Information Technology (IT) is recognized as an independent and unique research field. However, there has been ambiguity and difficulty in identifying and differentiating IT research from other close variations. Given this context, this…

Digital Libraries · Computer Science 2025-09-17 Said Varlioglu , Hazem Said , Murat Ozer , Nelly Elsayed

Relevant information in documents is often summarized in tables, helping the reader to identify useful facts. Most benchmark datasets support either document layout analysis or table understanding, but lack in providing data to apply both…

Computation and Language · Computer Science 2023-02-14 Andrea Gemelli , Emanuele Vivoli , Simone Marinai

Information extraction (IE) is a fundamental area in natural language processing where prompting large language models (LLMs), even with in-context examples, cannot defeat small LMs tuned on very small IE datasets. We observe that IE tasks,…

Computation and Language · Computer Science 2024-04-02 Letian Peng , Zilong Wang , Feng Yao , Zihan Wang , Jingbo Shang

Medical entity linking is the task of identifying and standardizing medical concepts referred to in an unstructured text. Most of the existing methods adopt a three-step approach of (1) detecting mentions, (2) generating a list of candidate…

Computation and Language · Computer Science 2021-08-24 Shikhar Vashishth , Denis Newman-Griffis , Rishabh Joshi , Ritam Dutt , Carolyn Rose

Automated relation extraction (RE) from biomedical literature is critical for many downstream text mining applications in both research and real-world settings. However, most existing benchmarking datasets for bio-medical RE only focus on…

Computation and Language · Computer Science 2022-07-20 Ling Luo , Po-Ting Lai , Chih-Hsuan Wei , Cecilia N Arighi , Zhiyong Lu

Literature analysis facilitates researchers better understanding the development of science and technology. The conventional literature analysis focuses on the topics, authors, abstracts, keywords, references, etc., and rarely pays…

Machine Learning · Computer Science 2019-12-02 Rujing Yao , Linlin Hou , Yingchun Ye , Ou Wu , Ji Zhang , Jian Wu

We present an open-access natural language processing toolkit for Japanese medical information extraction. We first propose a novel relation annotation schema for investigating the medical and temporal relations between medical entities in…

Computation and Language · Computer Science 2021-11-09 Fei Cheng , Shuntaro Yada , Ribeka Tanaka , Eiji Aramaki , Sadao Kurohashi

We present a novel approach to automating the identification of risk factors for diseases from medical literature, leveraging pre-trained models in the bio-medical domain, while tuning them for the specific task. Faced with the challenges…

Computation and Language · Computer Science 2024-07-11 Maxim Rubchinsky , Ella Rabinovich , Adi Shraibman , Netanel Golan , Tali Sahar , Dorit Shweiki

Scientific information extraction (SciIE), which aims to automatically extract information from scientific literature, is becoming more important than ever. However, there are no existing SciIE datasets for polymer materials, which is an…

Computation and Language · Computer Science 2023-11-15 Jerry Junyang Cheung , Yuchen Zhuang , Yinghao Li , Pranav Shetty , Wantian Zhao , Sanjeev Grampurohit , Rampi Ramprasad , Chao Zhang

We present the VIS30K dataset, a collection of 29,689 images that represents 30 years of figures and tables from each track of the IEEE Visualization conference series (Vis, SciVis, InfoVis, VAST). VIS30K's comprehensive coverage of the…

Computer Vision and Pattern Recognition · Computer Science 2024-04-25 Jian Chen , Meng Ling , Rui Li , Petra Isenberg , Tobias Isenberg , Michael Sedlmair , Torsten Möller , Robert S. Laramee , Han-Wei Shen , Katharina Wünsche , Qiru Wang

This paper presents DWIE, the 'Deutsche Welle corpus for Information Extraction', a newly created multi-task dataset that combines four main Information Extraction (IE) annotation subtasks: (i) Named Entity Recognition (NER), (ii)…

Computation and Language · Computer Science 2021-03-10 Klim Zaporojets , Johannes Deleu , Chris Develder , Thomas Demeester

Existing scholarly information extraction (SIE) datasets focus on scientific papers and overlook implementation-level details in code repositories. README files describe datasets, source code, and other implementation-level artifacts,…

Computation and Language · Computer Science 2026-03-09 Genet Asefa Gesese , Zongxiong Chen , Shufan Jiang , Mary Ann Tan , Zhaotai Liu , Sonja Schimmler , Harald Sack

Many practical applications of AI in medicine consist of semi-supervised discovery: The investigator aims to identify features of interest at a resolution more fine-grained than that of the available human labels. This is often the scenario…

Computation and Language · Computer Science 2020-04-08 Allen Schmaltz , Andrew Beam

Identifying suitable datasets for a research question remains challenging because existing dataset search engines rely heavily on metadata quality and keyword overlap, which often fail to capture the semantic intent of scientific…

Digital Libraries · Computer Science 2026-01-09 Zhiyin Tan , Changxu Duan

Manual digitization of bibliographic metadata is time consuming and labor intensive, especially for historical and real-world archives with highly variable formatting across documents. Despite advances in machine learning, the absence of…

Computer Vision and Pattern Recognition · Computer Science 2025-03-26 Jan Kohút , Martin Dočekal , Michal Hradiš , Marek Vaško

Information Extraction (IE), encompassing Named Entity Recognition (NER), Named Entity Linking (NEL), and Relation Extraction (RE), is critical for transforming the rapidly growing volume of scientific publications into structured,…

Knowledge understanding is a foundational part of envisioned 6G networks to advance network intelligence and AI-native network architectures. In this paradigm, information extraction plays a pivotal role in transforming fragmented telecom…

Computation and Language · Computer Science 2025-05-22 Ye Yuan , Haolun Wu , Hao Zhou , Xue Liu , Hao Chen , Yan Xin , Jianzhong , Zhang

The rapid expansion of research across machine learning, vision, and language has produced a volume of publications that is increasingly difficult to synthesize. Traditional bibliometric tools rely mainly on metadata and offer limited…

Computer Vision and Pattern Recognition · Computer Science 2026-04-16 Zhucun Xue , Jiangning Zhang , Juntao Jiang , Jinzhuo Liu , Haoyang He , Teng Hu , Xiaobin Hu , Yong Liu , Shuicheng Yan