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Generalized additive models (GAMs) offer interpretability through independent univariate feature effects but underfit when interactions are present in data. GA$^2$Ms add selected pairwise interactions which improves accuracy, but sacrifices…

Understanding molecular structure and related knowledge is crucial for scientific research. Recent studies integrate molecular graphs with their textual descriptions to enhance molecular representation learning. However, they focus on the…

We present Graph Foundation Models (GFMs) which have made significant progress in various tasks, but their robustness against domain noise, structural perturbations, and adversarial attacks remains underexplored. A key limitation is the…

Atomistic foundation models (AFMs) have great promise as accurate interatomic potentials, and have enabled data-efficient molecular dynamics simulations with near quantum mechanical accuracy. However, AFMs remain markedly slower at…

Molecular representation learning is a crucial task in predicting molecular properties. Molecules are often modeled as graphs where atoms and chemical bonds are represented as nodes and edges, respectively, and Graph Neural Networks (GNNs)…

We propose Medial Atom Ray Fields (MARFs), a novel neural object representation that enables accurate differentiable surface rendering with a single network evaluation per camera ray. Existing neural ray fields struggle with multi-view…

Due to the widespread use of complex machine learning models in real-world applications, it is becoming critical to explain model predictions. However, these models are typically black-box deep neural networks, explained post-hoc via…

Translating natural language questions into SPARQL queries enables Knowledge Base querying for factual and up-to-date responses. However, existing datasets for this task are predominantly template-based, leading models to learn superficial…

Many predictive tasks of web applications need to model categorical variables, such as user IDs and demographics like genders and occupations. To apply standard machine learning techniques, these categorical predictors are always converted…

Recent advancements in machine learning (ML) and deep learning (DL), particularly through the introduction of Foundation Models (FMs), have significantly enhanced surgical scene understanding within minimally invasive surgery (MIS). This…

Molecular representation learning contributes to multiple downstream tasks such as molecular property prediction and drug design. To properly represent molecules, graph contrastive learning is a promising paradigm as it utilizes…

Molecular representations fundamentally shape how machine learning systems reason about molecular structure and physical properties. Most existing approaches adopt a discrete pipeline: molecules are encoded as sequences, graphs, or point…

Multimodal foundation models have significantly improved feature representation by integrating information from multiple modalities, making them highly suitable for a broader set of applications. However, the exploration of multimodal…

Machine learning, and representation learning in particular, has the potential to facilitate drug discovery by screening a large chemical space in silico. A successful approach for representing molecules is to treat them as a graph and…

Recent advances in Wireless Physical Layer Foundation Models (WPFMs) promise a new paradigm of universal Radio Frequency (RF) representations. However, these models inherit critical limitations found in deep learning such as the lack of…

Molecular property prediction is a critical task in computational drug discovery. While recent advances in Graph Neural Networks (GNNs) and Transformers have shown to be effective and promising, they face the following limitations:…

Deep Learning has revolutionized machine learning, reaching unprecedented levels of accuracy, but at the cost of reduced interpretability. Especially in image processing systems, deep networks transform local pixel information into more…

While interpretability is crucial for machine learning applications in safety-critical domains and for regulatory compliance, existing tabular foundation models like TabPFN lack transparency. Generalized Additive Models (GAMs) provide the…

Facial micro-expressions, characterized by their subtle and brief nature, are valuable indicators of genuine emotions. Despite their significance in psychology, security, and behavioral analysis, micro-expression recognition remains…

Recent research in molecular discovery has primarily been devoted to small, drug-like molecules, leaving many similarly important applications in material design without adequate technology. These applications often rely on more complex…