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Heterogeneous distribution of passive and active domains in the chromosome plays a crucial role for its dynamic organization within the cell nucleus. Motivated by that here we investigate the steady-state conformation and dynamics of a…

Soft Condensed Matter · Physics 2024-09-27 Suman Majumder , Subhajit Paul

We develop a model to describe the properties of random assemblies of polydisperse hard spheres. We show that the key features to describe the system are (i) the dependence between the free volume of a sphere and the various coordination…

Disordered Systems and Neural Networks · Physics 2015-05-19 Maximilien Danisch , Yuliang Jin , Hernan A. Makse

We investigate equal spheres packings generated from several experiments and from a large number of different numerical simulations. The structural organization of these disordered packings is studied in terms of the network of common…

Statistical Mechanics · Physics 2008-06-26 T. Aste , T. Di Matteo

The coarse-graining of amorphous plasticity from the atomistic to the mesoscopic scale is studied in the framework of a simple scalar elasto-plastic model. Building on recent results obtained on the atomistic scale, we discuss the interest…

The large scale fluctuations of the ordered state in active matter systems are usually characterised by studying the "giant number fluctuations" of particles in any finite volume, as compared to the expectations from the central limit…

Soft Condensed Matter · Physics 2018-05-25 Supravat Dey , Dibyendu Das , R. Rajesh

This article reviews recent developments in statistical field theory far from equilibrium. It focuses on the Kardar-Parisi-Zhang equation of stochastic surface growth and its mathematical relatives, namely the stochastic Burgers equation in…

Condensed Matter · Physics 2015-06-25 Michael Lassig

In cell membranes, proteins and lipids diffuse in a highly crowded and heterogeneous landscape, where aggregates and dense domains of proteins or lipids obstruct the path of diffusing molecules. In general, hindered motion gives rise to…

Soft Condensed Matter · Physics 2010-06-16 Margaret R. Horton , Felix Höfling , Joachim O. Rädler , Thomas Franosch

Living many-body systems often exhibit scale-free collective behavior reminiscent of thermal critical phenomena. But their mutual interactions are inevitably retarded due to information processing and delayed actuation. We numerically…

Soft Condensed Matter · Physics 2021-12-16 Viktor Holubec , Daniel Geiss , Sarah A. M. Loos , Klaus Kroy , Frank Cichos

We address the folding induced by differential growth in soft layered solids via an elementary model that consists of a soft growing neo-Hookean elastic layer adhered to a deep elastic substrate. As the layer/substrate modulus ratio is…

Soft Condensed Matter · Physics 2015-09-30 Tuomas Tallinen , John S. Biggins

Over the past decade, advances in super-resolution microscopy and particle-based modeling have driven an intense interest in investigating spatial heterogeneity at the level of single molecules in cells. Remarkably, it is becoming clear…

Molecular Networks · Quantitative Biology 2013-11-19 Andrew Mugler , Pieter Rein ten Wolde

We study packings of bidispersed spherical particles on a spherical surface. The presence of curvature necessitates defects even for monodispersed particles; bidispersity either leads to a more disordered packing for nearly equal radii, or…

Soft Condensed Matter · Physics 2016-08-03 Andrew M. Mascioli , Christopher J. Burke , Timothy J. Atherton

Using X-ray tomography, we experimentally investigate the structural evolution of packings composed of 3D-printed hexapod particles, each formed by three mutually orthogonal spherocylinders, during tap-induced compaction. We identify two…

Three-dimensional discrete numerical simulation is used to investigate the properties of close-packed frictionless granular assemblies as a function of particle polydispersity and shape. Unlike some experimental results, simulations show…

Soft Condensed Matter · Physics 2017-07-20 Jean-François Camenen , Yannick Descantes

Experiments in quasi 2-dimensional geometry (Hele Shaw cells) in which a fluid is injected into a visco-elastic medium (foam, clay or associating-polymers) show patterns akin to fracture in brittle materials, very different from standard…

Statistical Mechanics · Physics 2009-11-07 Anders Levermann , Itamar Procaccia

The formation of quasi-spherical cages from protein building blocks is a remarkable self-assembly process in many natural systems, where a small number of elementary building blocks are assembled to build a highly symmetric icosahedral…

Inelastic surface growth associated with continuous creation of incompatibility on the boundary of an evolving body is behind a variety of natural and technological processes, including embryonic development and 3D printing. In this paper…

Soft Condensed Matter · Physics 2017-12-25 Giuseppe Zurlo , Lev Truskinovsky

The mean size of exponentially dividing E. coli cells cultured in different nutrient conditions is known to depend on the mean growth rate only. However, the joint fluctuations relating cell size, doubling time and individual growth rate…

Systems evolving through aggregation and fragmentation may possess an intriguing super-cluster state (SCS). Clusters constituting this state are mostly large, so the SCS resembles a gelling state. The formation of the SCS is controlled by…

Statistical Mechanics · Physics 2026-01-23 Nikolai V. Brilliantov , Wendy Otieno , P. L. Krapivsky

Phase separation driven by nonequilibrium fluctuations is a hallmark of both living and synthetic active matter. Unlike equilibrium systems, where ordered states arise from the minimization of free energy, active systems are fueled by a…

We study the effect of the presence of a regular substrate pattern on the irreversible adsorption of nanosized and colloid particles. Deposition of disks of radius $r_0$ is considered, with the allowed regions for their center attachment at…

Statistical Mechanics · Physics 2010-10-12 N. A. M. Araujo , A. Cadilhe , Vladimir Privman
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