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Pre-trained LLMs have demonstrated substantial capabilities across a range of conventional natural language processing (NLP) tasks, such as summarization and entity recognition. In this paper, we explore the application of LLMs in the…

Quantitative Methods · Quantitative Biology 2024-08-14 Kamyar Zeinalipour , Neda Jamshidi , Monica Bianchini , Marco Maggini , Marco Gori

Recent developments in large language models (LLMs) have been accompanied by rapidly growing public interest in natural language processing (NLP). This attention is reflected by major news venues, which sometimes invite NLP researchers to…

Computers and Society · Computer Science 2025-07-17 Shomir Wilson

Our research investigates how Natural Language Processing (NLP) can be used to extract main topics from a larger corpus of written data, as applied to the case of identifying signaling themes in Presidential Directives (PDs) from the Reagan…

Computation and Language · Computer Science 2025-11-14 C. LeMay , A. Lane , J. Seales , M. Winstead , S. Baty

Training a model with access to human explanations can improve data efficiency and model performance on in- and out-of-domain data. Adding to these empirical findings, similarity with the process of human learning makes learning from…

Computation and Language · Computer Science 2022-04-20 Mareike Hartmann , Daniel Sonntag

Natural language processing (NLP) has recently gained much attention for representing and analysing human language computationally. It has spread its applications in various fields such as machine translation, email spam detection,…

Computation and Language · Computer Science 2022-08-01 Diksha Khurana , Aditya Koli , Kiran Khatter , Sukhdev Singh

This research investigates the application of Large Language Models (LLMs) to augment conversational agents in process mining, aiming to tackle its inherent complexity and diverse skill requirements. While LLM advancements present novel…

Artificial Intelligence · Computer Science 2023-07-20 Urszula Jessen , Michal Sroka , Dirk Fahland

Large Language Models (LLMs) have emerged as dominant foundational models in modern NLP. However, the understanding of their prediction processes and internal mechanisms, such as feed-forward networks (FFN) and multi-head self-attention…

Computation and Language · Computer Science 2024-04-16 Xintong Wang , Xiaoyu Li , Xingshan Li , Chris Biemann

Large Language models (LLMs) have emerged as powerful tools for addressing challenges across diverse domains. Notably, recent studies have demonstrated that large language models significantly enhance the efficiency of biomolecular analysis…

Computation and Language · Computer Science 2025-03-07 Jiyue Jiang , Zikang Wang , Yuheng Shan , Heyan Chai , Jiayi Li , Zixian Ma , Xinrui Zhang , Yu Li

This article reviews recent advances in applying natural language processing (NLP) to Electronic Health Records (EHRs) for computational phenotyping. NLP-based computational phenotyping has numerous applications including diagnosis…

Computation and Language · Computer Science 2018-06-18 Zexian Zeng , Yu Deng , Xiaoyu Li , Tristan Naumann , Yuan Luo

Peptides play a pivotal role in a wide range of biological activities through participating in up to 40% protein-protein interactions in cellular processes. They also demonstrate remarkable specificity and efficacy, making them promising…

Biomolecules · Quantitative Biology 2024-02-09 Song Yin , Xuenan Mi , Diwakar Shukla

State-of-the-art natural language processing (NLP) models are trained on massive training corpora, and report a superlative performance on evaluation datasets. This survey delves into an important attribute of these datasets: the dialect of…

Computation and Language · Computer Science 2024-12-10 Aditya Joshi , Raj Dabre , Diptesh Kanojia , Zhuang Li , Haolan Zhan , Gholamreza Haffari , Doris Dippold

Recent natural language processing (NLP) techniques have accomplished high performance on benchmark datasets, primarily due to the significant improvement in the performance of deep learning. The advances in the research community have led…

Computation and Language · Computer Science 2022-10-24 Marwan Omar , Soohyeon Choi , DaeHun Nyang , David Mohaisen

Analysing and modelling interactive behaviour is an important topic in human-computer interaction (HCI) and a key requirement for the development of intelligent interactive systems. Interactive behaviour has a sequential (actions happen one…

Human-Computer Interaction · Computer Science 2023-05-15 Guanhua Zhang , Matteo Bortoletto , Zhiming Hu , Lei Shi , Mihai Bâce , Andreas Bulling

The rapid development of Large Language Models (LLMs) demonstrates remarkable multilingual capabilities in natural language processing, attracting global attention in both academia and industry. To mitigate potential discrimination and…

Computation and Language · Computer Science 2025-01-08 Kaiyu Huang , Fengran Mo , Xinyu Zhang , Hongliang Li , You Li , Yuanchi Zhang , Weijian Yi , Yulong Mao , Jinchen Liu , Yuzhuang Xu , Jinan Xu , Jian-Yun Nie , Yang Liu

Computational protein-protein interaction (PPI) prediction techniques can contribute greatly in reducing time, cost and false-positive interactions compared to experimental approaches. Sequence is one of the key and primary information of…

Machine Learning · Computer Science 2022-03-29 Soumyadeep Debnath , Ayatullah Faruk Mollah

Large Language Models (LLMs) excel in handling general knowledge tasks, yet they struggle with user-specific personalization, such as understanding individual emotions, writing styles, and preferences. Personalized Large Language Models…

Artificial Intelligence · Computer Science 2025-09-23 Jiahong Liu , Zexuan Qiu , Zhongyang Li , Quanyu Dai , Wenhao Yu , Jieming Zhu , Minda Hu , Menglin Yang , Tat-Seng Chua , Irwin King

The binding between proteins and ligands plays a crucial role in the realm of drug discovery. Previous deep learning approaches have shown promising results over traditional computationally intensive methods, but resulting in poor…

Biomolecules · Quantitative Biology 2023-11-29 Shikun Feng , Minghao Li , Yinjun Jia , Weiying Ma , Yanyan Lan

The field of natural language processing has seen impressive progress in recent years, with neural network models replacing many of the traditional systems. A plethora of new models have been proposed, many of which are thought to be opaque…

Computation and Language · Computer Science 2019-01-15 Yonatan Belinkov , James Glass

As an efficient approach to understand, generate, and process natural language texts, research in natural language processing (NLP) has exhibited a rapid spread and wide adoption in recent years. Given the increasing research work in this…

Computation and Language · Computer Science 2023-09-26 Tim Schopf , Karim Arabi , Florian Matthes

Protein Language Models (PLMs), pre-trained on extensive evolutionary data from natural proteins, have emerged as indispensable tools for protein design. While powerful, PLMs often struggle to produce proteins with precisely specified…

Biomolecules · Quantitative Biology 2025-09-15 Long-Kai Huang , Rongyi Zhu , Bing He , Jianhua Yao