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Modern high-throughput sequencing technologies have enabled us to profile multiple molecular modalities from the same single cell, providing unprecedented opportunities to assay celluar heterogeneity from multiple biological layers.…
The precise diagnosis is of great significance in developing precise treatment plans to restore neck function and reduce the burden posed by the cervical spondylosis (CS). However, the current available neck function assessment method are…
Clustering is an important facet of explorative data mining and finds extensive use in several fields. In this paper, we propose an extension of the classical Fuzzy C-Means clustering algorithm. The proposed algorithm, abbreviated as VFC,…
Data analysis plays an indispensable role for value creation in industry. Cluster analysis in this context is able to explore given datasets with little or no prior knowledge and to identify unknown patterns. As (big) data complexity…
Clustering techniques are often validated using benchmark datasets where class labels are used as ground-truth clusters. However, depending on the datasets, class labels may not align with the actual data clusters, and such misalignment…
We develop a Vector Quantized Spectral Clustering (VQSC) algorithm that is a combination of Spectral Clustering (SC) and Vector Quantization (VQ) sampling for grouping Soybean genomes. The inspiration here is to use SC for its accuracy and…
Single-cell RNA sequencing (scRNA-seq) is essential for unraveling cellular heterogeneity and diversity, offering invaluable insights for bioinformatics advancements. Despite its potential, traditional clustering methods in scRNA-seq data…
Agricultural research has accelerated in recent years, yet farmers often lack the time and resources for on-farm research due to the demands of crop production and farm operations. Seed classification offers valuable insights into quality…
The investigation of plant transcriptional regulation constitutes a fundamental basis for crop breeding, where cis-regulatory elements (CREs), as the key factor determining gene expression, have become the focus of crop genetic improvement…
In this paper, we propose a novel learning paradigm called "DeepFlorist" for flower classification using ensemble learning as a meta-classifier. DeepFlorist combines the power of deep learning with the robustness of ensemble methods to…
Deep clustering outperforms conventional clustering by mutually promoting representation learning and cluster assignment. However, most existing deep clustering methods suffer from two major drawbacks. First, most cluster assignment methods…
Deep clustering methods improve the performance of clustering tasks by jointly optimizing deep representation learning and clustering. While numerous deep clustering algorithms have been proposed, most of them rely on artificially…
Multiview clustering (MVC) aims to reveal the underlying structure of multiview data by categorizing data samples into clusters. Deep learning-based methods exhibit strong feature learning capabilities on large-scale datasets. For most…
Deep clustering can optimize representations of instances (i.e., representation learning) and explore the inherent data distribution (i.e., clustering) simultaneously, which demonstrates a superior performance over conventional clustering…
This paper considers the problem of evaluating clusterings of very large populations of items. Given two clusterings, namely a Baseline clustering and an Experiment clustering, the tasks are twofold: 1) characterize their differences, and…
Sickle cell anemia, which is characterized by abnormal erythrocyte morphology, can be detected using microscopic images. Computational techniques in medicine enhance the diagnosis and treatment efficiency. However, many computational…
In this paper, we have proposed a deep quantum SVM formulation, and further demonstrated a quantum-clustering framework based on the quantum deep SVM formulation, deep convolutional neural networks, and quantum K-Means clustering. We have…
Fair clustering is crucial for mitigating bias in unsupervised learning, yet existing algorithms often suffer from quadratic or super-quadratic computational complexity, rendering them impractical for large-scale datasets. To bridge this…
Technological advances facilitate the ability to acquire multimodal data, posing a challenge for recognition systems while also providing an opportunity to use the heterogeneous nature of the information to increase the generalization…
Sequence labeling models often benefit from incorporating external knowledge. However, this practice introduces data heterogeneity and complicates the model with additional modules, leading to increased expenses for training a…