Related papers: Basis sequence reconfiguration in the union of mat…
In this sequel to "Foundations of matroids - Part 1", we establish several presentations of the foundation of a matroid in terms of small building blocks. For example, we show that the foundation of a matroid M is the colimit of the…
For a fixed "pattern" graph $G$, the $\textit{colored $G$-subgraph isomorphism problem}$ (denoted $\mathrm{SUB}(G)$) asks, given an $n$-vertex graph $H$ and a coloring $V(H) \to V(G)$, whether $H$ contains a properly colored copy of $G$.…
The submodular partitioning problem asks to minimize, over all partitions $P$ of a ground set $V$, the sum of a given submodular function $f$ over the parts of $P$. The problem has seen considerable work in approximability, as it…
We define an independence system associated with simple graphs. We prove that the independence system is a matroid for certain families of graphs, including trees, with bases as minimal resolving sets. Consequently, the greedy algorithm on…
For a graph property $\Pi$, Subgraph Complementation to $\Pi$ is the problem to find whether there is a subset $S$ of vertices of the input graph $G$ such that modifying $G$ by complementing the subgraph induced by $S$ results in a graph…
A binary tanglegram is a pair <S,T> of binary trees whose leaf sets are in one-to-one correspondence; matching leaves are connected by inter-tree edges. For applications, for example in phylogenetics or software engineering, it is required…
A spanning tree of a graph is a connected subgraph on all vertices with the minimum number of edges. The number of spanning trees in a graph $G$ is given by Matrix Tree Theorem in terms of principal minors of Laplacian matrix of $G$. We…
In this paper, we consider a tree inference problem motivated by the critical problem in single-cell genomics of reconstructing dynamic cellular processes from sequencing data. In particular, given a population of cells sampled from such a…
We consider here the problem of chaining seeds in ordered trees. Seeds are mappings between two trees Q and T and a chain is a subset of non overlapping seeds that is consistent with respect to postfix order and ancestrality. This problem…
A spanning tree $T$ of graph $G$ is a $\rho$-approximate universal Steiner tree (UST) for root vertex $r$ if, for any subset of vertices $S$ containing $r$, the cost of the minimal subgraph of $T$ connecting $S$ is within a $\rho$ factor of…
We study approaches for the exact solution of the \NP--hard minimum spanning tree problem under conflict constraints. Given a graph $G(V,E)$ and a set $C \subset E \times E$ of conflicting edge pairs, the problem consists of finding a…
Rotation distance between rooted binary trees measures the number of simple operations it takes to transform one tree into another. There are no known polynomial-time algorithms for computing rotation distance. We give an efficient,…
In the Properly Colored Spanning Tree problem, we are given an edge-colored undirected graph and the goal is to find a properly colored spanning tree, i.e., a spanning tree in which any two adjacent edges have distinct colors. The problem…
Rotation distance between trees measures the number of simple operations it takes to transform one tree into another. There are no known polynomial-time algorithms for computing rotation distance. In the case of ordered rooted trees, we…
The minimum degree spanning tree (MDST) problem requires the construction of a spanning tree $T$ for graph $G=(V,E)$ with $n$ vertices, such that the maximum degree $d$ of $T$ is the smallest among all spanning trees of $G$. In this paper,…
An st-shortest path, or st-path for short, in a graph G is a shortest (induced) path from s to t in G. Two st-paths are said to be adjacent if they differ on exactly one vertex. A reconfiguration sequence between two st-paths P and Q is a…
Given a set $P$ of $n$ red and blue points in the plane, a \emph{planar bichromatic spanning tree} of $P$ is a spanning tree of $P$, such that each edge connects between a red and a blue point, and no two edges intersect. In the bottleneck…
The treewidth of a graph is an important invariant in structural and algorithmic graph theory. This paper studies the treewidth of line graphs. We show that determining the treewidth of the line graph of a graph $G$ is equivalent to…
Branchwidth determines how graphs, and more generally, arbitrary connectivity (basically symmetric and submodular) functions could be decomposed into a tree-like structure by specific cuts. We develop a general framework for designing…
We study the problem of deciding reconfigurability of target sets of a graph. Given a graph $G$ with vertex thresholds $\tau$, consider a dynamic process in which vertex $v$ becomes activated once at least $\tau(v)$ of its neighbors are…