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The analysis of spatial data from biological imaging technology, such as imaging mass spectrometry (IMS) or imaging mass cytometry (IMC), is challenging because of a competitive sampling process which convolves signals from molecules in a…

Machine Learning · Statistics 2025-09-26 Joaquim Valerio Teixeira , Ed Reznik , Sudpito Banerjee , Wesley Tansey

The rapid development of digital pathology and modern deep learning has facilitated the emergence of pathology foundation models that are expected to solve general pathology problems under various disease conditions in one unified model,…

Computer Vision and Pattern Recognition · Computer Science 2025-07-10 Yutong Sun , Sichen Zhu , Peng Qiu

The choice of visualisation in empirical performance analysis is not a neutral presentation decision but an analytical one: different graphical forms reveal different features of the same dataset, and reliance on any single type…

Sound · Computer Science 2026-04-22 Ignasi Sole

We revisit the design space of visualizations aiming at identifying and relating its components. In this sense, we establish a model to examine the process through which visualizations become expressive for users. This model has leaded us…

Graphics · Computer Science 2015-05-29 Jose F. Rodrigues , Agma J. M. Traina , Maria C. F. Oliveira , Caetano Traina

Composite visualization is a popular design strategy that represents complex datasets by integrating multiple visualizations in a meaningful and aesthetic layout, such as juxtaposition, overlay, and nesting. With this strategy, numerous…

Human-Computer Interaction · Computer Science 2022-11-04 Dazhen Deng , Weiwei Cui , Xiyu Meng , Mengye Xu , Yu Liao , Haidong Zhang , Yingcai Wu

Spatial transcriptomics is an emerging technology that aligns histopathology images with spatially resolved gene expression profiling. It holds the potential for understanding many diseases but faces significant bottlenecks such as…

Computer Vision and Pattern Recognition · Computer Science 2024-01-12 Gabriel Mejia , Paula Cárdenas , Daniela Ruiz , Angela Castillo , Pablo Arbeláez

Visual analytics (VA) systems have been widely used in various application domains. However, VA systems are complex in design, which imposes a serious problem: although the academic community constantly designs and implements new designs,…

Human-Computer Interaction · Computer Science 2024-02-27 Lu Ying , Aoyu Wu , Haotian Li , Zikun Deng , Ji Lan , Jiang Wu , Yong Wang , Huamin Qu , Dazhen Deng , Yingcai Wu

Constructing latent vector representation for nodes in a network through embedding models has shown its practicality in many graph analysis applications, such as node classification, clustering, and link prediction. However, despite the…

Human-Computer Interaction · Computer Science 2018-08-29 Quan Li , Kristanto Sean Njotoprawiro , Hammad Haleem , Qiaoan Chen , Chris Yi , Xiaojuan Ma

This paper studies visual search using structured queries. The structure is in the form of a 2D composition that encodes the position and the category of the objects. The transformation of the position and the category of the objects leads…

Computer Vision and Pattern Recognition · Computer Science 2020-10-28 Mert Kilickaya , Arnold W. M. Smeulders

One of the challenges in analyzing high-dimensional expression data is the detection of important biological signals. A common approach is to apply a dimension reduction method, such as principal component analysis. Typically, after…

Quantitative Methods · Quantitative Biology 2012-06-05 Andreas Lehrmann , Michael Huber , Aydin C. Polatkan , Albert Pritzkau , Kay Nieselt

Multiple-view visualization (MV) is a layout design technique often employed to help users see a large number of data attributes and values in a single cohesive representation. Because of its generalizability, the MV design has been widely…

Human-Computer Interaction · Computer Science 2020-08-05 Xi Chen , Wei Zeng , Yanna Lin , Hayder Mahdi Al-maneea , Jonathan Roberts , Remco Chang

Memory bandwidth is strongly correlated to the complexity of the memory access pattern of a running application. To improve memory performance of applications with irregular and/or unpredictable memory patterns, we need tools to analyze…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-03-10 Pavlos Aimoniotis , Maria Rafaela Gkeka , Nikolaos Bellas

Single-cell RNA-sequencing technologies may provide valuable insights to the understanding of the composition of different cell types and their functions within a tissue. Recent technologies such as spatial transcriptomics, enable the…

Applications · Statistics 2023-05-16 Arhit Chakrabarti , Yang Ni , Bani K. Mallick

Spatial transcriptomics (ST) enables the visualization of gene expression within the context of tissue morphology. This emerging discipline has the potential to serve as a foundation for developing tools to design precision medicines.…

Image and Video Processing · Electrical Eng. & Systems 2024-11-12 Shivam Kumar , Samrat Chatterjee

We present InvVis, a new approach for invertible visualization, which is reconstructing or further modifying a visualization from an image. InvVis allows the embedding of a significant amount of data, such as chart data, chart information,…

Computer Vision and Pattern Recognition · Computer Science 2023-09-06 Huayuan Ye , Chenhui Li , Yang Li , Changbo Wang

Well-designed data visualizations can lead to more powerful and intuitive processing by a viewer. To help a viewer intuitively compare values to quickly generate key takeaways, visualization designers can manipulate how data values are…

Human-Computer Interaction · Computer Science 2021-08-17 Cindy Xiong , Vidya Setlur , Benjamin Bach , Kylie Lin , Eunyee Koh , Steven Franconeri

Visualizing data is often a crucial first step in data analytics workflows, but growing data sizes pose challenges due to computational and visual perception limitations. As a result, data analysts commonly down-sample their data and work…

Human-Computer Interaction · Computer Science 2025-06-04 Zafeiria Moumoulidou , Hamza Elhamdadi , Ke Yang , Subrata Mitra , Cindy Xiong Bearfield , Alexandra Meliou

How to extract useful insights from data is always a challenge, especially if the data is multidimensional. Often, the data can be organized according to certain hierarchical structure that are stemmed either from data collection process or…

Applications · Statistics 2016-04-21 Kun Yang , Wing Hung Wong

The increased availability of the multi-view data (data on the same samples from multiple sources) has led to strong interest in models based on low-rank matrix factorizations. These models represent each data view via shared and individual…

Machine Learning · Statistics 2021-04-01 Irina Gaynanova , Gen Li

Data slice finding is an emerging technique for validating machine learning (ML) models by identifying and analyzing subgroups in a dataset that exhibit poor performance, often characterized by distinct feature sets or descriptive metadata.…

Computer Vision and Pattern Recognition · Computer Science 2025-02-19 Xiwei Xuan , Jorge Piazentin Ono , Liang Gou , Kwan-Liu Ma , Liu Ren