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Regression testing is an essential activity to assure that software code changes do not adversely affect existing functionalities. With the wide adoption of Continuous Integration (CI) in software projects, which increases the frequency of…

Software Engineering · Computer Science 2022-09-07 Rongqi Pan , Mojtaba Bagherzadeh , Taher A. Ghaleb , Lionel Briand

Data augmentation is commonly used to encode invariances in learning methods. However, this process is often performed in an inefficient manner, as artificial examples are created by applying a number of transformations to all points in the…

Machine Learning · Computer Science 2019-03-04 Michael Kuchnik , Virginia Smith

The question of how individual patient data from cohort studies or historical clinical trials can be leveraged for designing more powerful, or smaller yet equally powerful, clinical trials becomes increasingly important in the era of…

Methodology · Statistics 2022-09-01 Sandra Siegfried , Stephen Senn , Torsten Hothorn

The learning curve expresses the error rate of a predictive modeling procedure as a function of the sample size of the training dataset. It typically is a decreasing, convex function with a positive limiting value. An estimate of the…

Applications · Statistics 2012-03-14 Eric B. Laber , Kerby Shedden , Yang Yang

RNA sequencing (RNA-seq) is the conventional genome-scale approach used to capture the expression levels of all detectable genes in a biological sample. This is now regularly used for population-based studies designed to identify genetic…

Genomics · Quantitative Biology 2026-05-25 Christopher Thron , Farhad Jafari

Sampling biases in training data are a major source of algorithmic biases in machine learning systems. Although there are many methods that attempt to mitigate such algorithmic biases during training, the most direct and obvious way is…

Machine Learning · Statistics 2022-04-15 Laura Niss , Yuekai Sun , Ambuj Tewari

The DNA microarray technology has modernized the approach of biology research in such a way that scientists can now measure the expression levels of thousands of genes simultaneously in a single experiment. Gene expression profiles, which…

Computational Engineering, Finance, and Science · Computer Science 2011-09-07 G. Victo Sudha George , V. Cyril Raj

We present a selective sampling method designed to accelerate the training of deep neural networks. To this end, we introduce a novel measurement, the minimal margin score (MMS), which measures the minimal amount of displacement an input…

Machine Learning · Computer Science 2019-11-19 Berry Weinstein , Shai Fine , Yacov Hel-Or

Driven by privacy protection laws and regulations, unlearning in Large Language Models (LLMs) is gaining increasing attention. However, current research often neglects the interpretability of the unlearning process, particularly concerning…

Machine Learning · Computer Science 2025-04-10 Xiaohua Feng , Yuyuan Li , Chengye Wang , Junlin Liu , Li Zhang , Chaochao Chen

The increasing complexity of modern deep neural network models and the expanding sizes of datasets necessitate the development of optimized and scalable training methods. In this white paper, we addressed the challenge of efficiently…

Machine Learning · Computer Science 2024-04-29 Raphael Ruschel , A. S. M. Iftekhar , B. S. Manjunath , Suya You

Support Vector Machines (SVM), a popular machine learning technique, has been applied to a wide range of domains such as science, finance, and social networks for supervised learning. Whether it is identifying high-risk patients by…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-06-20 Jeyanthi Narasimhan , Abhinav Vishnu , Lawrence Holder , Adolfy Hoisie

Metagenomics characterizes the taxonomic diversity of microbial communities by sequencing DNA directly from an environmental sample. One of the main challenges in metagenomics data analysis is the binning step, where each sequenced read is…

Quantitative Methods · Quantitative Biology 2015-05-27 Kévin Vervier , Pierre Mahé , Maud Tournoud , Jean-Baptiste Veyrieras , Jean-Philippe Vert

Semi-supervised learning is attracting blooming attention, due to its success in combining unlabeled data. However, pseudo-labeling-based semi-supervised approaches suffer from two problems in image classification: (1) Existing methods…

Computer Vision and Pattern Recognition · Computer Science 2024-07-08 Xuerong Zhang , Li Huang , Jing Lv , Ming Yang

Restricted mean survival time (RMST) is gaining attention as a measure to quantify the treatment effect on survival outcomes in randomized clinical trials. Several methods to determine sample size based on the RMST-based tests have been…

Methodology · Statistics 2022-12-19 Satoshi Hattori , Hajime Uno

Data mining, machine learning, and natural language processing are powerful techniques that can be used together to extract information from large texts. Depending on the task or problem at hand, there are many different approaches that can…

Information Retrieval · Computer Science 2017-11-08 Ricardo Baeza-Yates , Zeinab Liaghat

Knowing exactly how many data points need to be labeled to achieve a certain model performance is a hugely beneficial step towards reducing the overall budgets for annotation. It pertains to both active learning and traditional data…

Computation and Language · Computer Science 2023-07-04 Ernie Chang , Muhammad Hassan Rashid , Pin-Jie Lin , Changsheng Zhao , Vera Demberg , Yangyang Shi , Vikas Chandra

We propose and study a novel supervised approach to learning statistical semantic relatedness models from subjectively annotated training examples. The proposed semantic model consists of parameterized co-occurrence statistics associated…

Computation and Language · Computer Science 2013-11-12 Ran El-Yaniv , David Yanay

Although the parallel corpus has an irreplaceable role in machine translation, its scale and coverage is still beyond the actual needs. Non-parallel corpus resources on the web have an inestimable potential value in machine translation and…

Computation and Language · Computer Science 2014-05-23 Lijiang Chen

Large-scale genomic workflows used in precision medicine can process datasets spanning tens to hundreds of gigabytes per sample, leading to high memory spikes, intensive disk I/O, and task failures due to out-of-memory errors. Simple static…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-11-21 Daniel Mas Montserrat , Ray Verma , Míriam Barrabés , Francisco M. de la Vega , Carlos D. Bustamante , Alexander G. Ioannidis

When solving NLP tasks with limited labelled data, researchers typically either use a general large language model without further update, or use a small number of labelled samples to tune a specialised smaller model. In this work, we…

Computation and Language · Computer Science 2026-01-26 Branislav Pecher , Ivan Srba , Maria Bielikova