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Considerable financial resources are allocated for measuring ambient air pollution in the United States, yet the locations for these monitoring sites may not be optimized to capture the full extent of current pollution variability. Prior…

Applications · Statistics 2022-02-18 Makoto M. Kelp , Samuel Lin , J. Nathan Kutz , Loretta J. Mickley

We study the spreading of families in two-dimensional multispecies predator-prey systems, in which species cyclically dominate each other. In each time step randomly chosen individuals invade one of the nearest sites of the square lattice…

Populations and Evolution · Quantitative Biology 2009-11-10 Maria Ravasz , Gyorgy Szabo , Attila Szolnoki

Dispersal is ubiquitous throughout the tree of life: factors selecting for dispersal include kin competition, inbreeding avoidance and spatiotemporal variation in resources or habitat suitability. These factors differ in whether they…

Populations and Evolution · Quantitative Biology 2018-11-28 Xiang-Yi Li , Hanna Kokko

Habitat fragmentation, often driven by human activities, alters ecological landscapes by disrupting connectivity and reshaping species interactions. In such fragmented environments, habitats can be modeled as networks, where individuals…

Populations and Evolution · Quantitative Biology 2025-11-07 James Austin Orgeron , Malbor Asllani

We introduce a model of traveling agents ({\it e.g.} frugivorous animals) who feed on randomly located vegetation patches and disperse their seeds, thus modifying the spatial distribution of resources in the long term. It is assumed that…

Populations and Evolution · Quantitative Biology 2015-05-13 D. Boyer , O. López-Corona

We study the high temperature phase of a family of typed branching diffusions initially studied in [Ast\'{e}risque 236 (1996) 133--154] and [Lecture Notes in Math. 1729 (2000) 239--256 Springer, Berlin]. The primary aim is to establish some…

Probability · Mathematics 2007-05-23 Y. Git , J. W. Harris , S. C. Harris

In cell membranes, proteins and lipids diffuse in a highly crowded and heterogeneous landscape, where aggregates and dense domains of proteins or lipids obstruct the path of diffusing molecules. In general, hindered motion gives rise to…

Soft Condensed Matter · Physics 2010-06-16 Margaret R. Horton , Felix Höfling , Joachim O. Rädler , Thomas Franosch

This article introduces a computational method, called "Recapture of Diffusive Agents & Particle Swarm Optimization" (RDA-PSO), designed to estimate the dispersal parameter of diffusive insects in mark-release-recapture (MRR) field…

Quantitative Methods · Quantitative Biology 2026-01-21 Lidia Mrad , Joceline Lega

Optimal transport provides a metric which quantifies the dissimilarity between probability measures. For measures supported in discrete metric spaces, finding the optimal transport distance has cubic time complexity in the size of the…

Machine Learning · Computer Science 2024-01-30 Samantha Chen , Puoya Tabaghi , Yusu Wang

In the critical beta-splitting model of a random $n$-leaf rooted tree, clades are recursively split into sub-clades, and a clade of $m$ leaves is split into sub-clades containing $i$ and $m-i$ leaves with probabilities $\propto 1/(i(m-i))$.…

Probability · Mathematics 2024-12-18 David Aldous , Svante Janson

The task of sampling from a high-dimensional distribution $\pi$ on $\R^d$ is a fundamental algorithmic problem with applications throughout statistics, engineering, and the sciences. Consider the Langevin diffusion on $\R^d$ \begin{align*}…

Statistics Theory · Mathematics 2025-11-18 Tian Shen , Zhonggen Su

Maximum parsimony distance is a measure used to quantify the dissimilarity of two unrooted phylogenetic trees. It is NP-hard to compute, and very few positive algorithmic results are known due to its complex combinatorial structure. Here we…

Data Structures and Algorithms · Computer Science 2020-04-07 Mark Jones , Steven Kelk , Leen Stougie

Logistic regression is a commonly used building block in ecological modeling, but its additive structure among environmental predictors often assumes compensatory relationships between predictors, which can lead to problematic results. In…

Quantitative Methods · Quantitative Biology 2023-02-21 Hongliang Bu , Yunyi Shen

We consider a system of two competing populations in two-dimensional heterogeneous environments. The populations are assumed to move horizontally and vertically with different probabilities, but are otherwise identical. We regard these…

Analysis of PDEs · Mathematics 2020-02-26 Emeric Bouin , Guillaume Legendre , Yuan Lou , Nichole Slover

Porcine reproductive and respiratory syndrome virus (PRRSV) remains widely distributed across the U.S. swine industry. Between-farm movement of animals and transportation vehicles, along with local transmission are the primary routes by…

Populations and Evolution · Quantitative Biology 2023-02-09 Felipe Sanchez , Jason A. Galvis , Nicolas Cardenas , Cesar A. Corzo , Chris Jones , Gustavo Machado

We consider a generalised diffusion equation in two dimensions for modeling diffusion on a comb-like structures. We analyse the probability distribution functions and we derive the mean squared displacement in $x$ and $y$ directions.…

Statistical Mechanics · Physics 2016-06-23 Trifce Sandev , Alexander Iomin , Holger Kantz , Ralf Metzler , Aleksei Chechkin

Kernel techniques are among the most popular and flexible approaches in data science allowing to represent probability measures without loss of information under mild conditions. The resulting mapping called mean embedding gives rise to a…

Machine Learning · Statistics 2024-11-27 Linda Chamakh , Zoltan Szabo

This paper provides a general framework for Stein's density method for multivariate continuous distributions. The approach associates to any probability density function a canonical operator and Stein class, as well as an infinite…

Probability · Mathematics 2023-04-27 Guillaume Mijoule , Martin Raič , Gesine Reinert , Yvik Swan

The margins within the geographic range of species are often specific in terms of ecological and evolutionary processes, and can strongly influence the species' reaction to climate change. One of the frequently observed features at range…

Populations and Evolution · Quantitative Biology 2020-02-28 R. Juhász , B. Oborny

Many biological processes involve one dimensional diffusion over a correlated inhomogeneous energy landscape with a correlation length $\xi_c$. Typical examples are specific protein target location on DNA, nucleosome repositioning, or DNA…

Biomolecules · Quantitative Biology 2007-05-23 Michael Slutsky , Mehran Kardar , Leonid A. Mirny