Related papers: An Efficient Algorithm for Group Testing with Runl…
Batch codes serve as critical tools for load balancing in distributed storage systems. While numerous constructions exist for specific batch sizes t, current methodologies predominantly rely on code dimension parameters, limiting their…
In this paper, a construction of $(n,k,\delta)$ LDPC convolutional codes over arbitrary finite fields, which generalizes the work of Robinson and Bernstein and the later work of Tong is provided. The sets of integers forming a…
We propose algorithms that, given the input string of length $n$ over integer alphabet of size $\sigma$, construct the Burrows-Wheeler transform (BWT), the permuted longest-common-prefix (PLCP) array, and the LZ77 parsing in…
In the long-studied problem of combinatorial group testing, one is asked to detect a set of $k$ defective items out of a population of size $n$, using $m \ll n$ disjunctive measurements. In the non-adaptive setting, the most widely used…
We revisit the task of computing the edit distance in sublinear time. In the $(k,K)$-gap edit distance problem the task is to distinguish whether the edit distance of two strings is at most $k$ or at least $K$. It has been established by…
We study randomized algorithms for constrained optimization, in abstract frameworks that include, in strictly increasing generality: convex programming; LP-type problems; violator spaces; and a setting we introduce, consistent spaces. Such…
Longest common extension queries (LCE queries) and runs are ubiquitous in algorithmic stringology. Linear-time algorithms computing runs and preprocessing for constant-time LCE queries have been known for over a decade. However, these…
We consider the problem of encoding a string of length $n$ from an integer alphabet of size $\sigma$ so that access and substring equality queries (that is, determining the equality of any two substrings) can be answered efficiently. Any…
In the restricted shortest paths problem, we are given a graph $G$ whose edges are assigned two non-negative weights: lengths and delays, a source $s$, and a delay threshold $D$. The goal is to find, for each target $t$, the length of the…
This paper investigates the approximability of the Longest Common Subsequence (LCS) problem. The fastest algorithm for solving the LCS problem exactly runs in essentially quadratic time in the length of the input, and it is known that under…
We present an optimal, combinatorial 1-1/e approximation algorithm for monotone submodular optimization over a matroid constraint. Compared to the continuous greedy algorithm (Calinescu, Chekuri, Pal and Vondrak, 2008), our algorithm is…
Block-structured integer linear programs (ILPs) play an important role in various application fields. We address $n$-fold ILPs where the matrix $\mathcal{A}$ has a specific structure, i.e., where the blocks in the lower part of…
Complex orthogonal designs (CODs) are used to construct space-time block codes. COD $\mathcal{O}_z$ with parameter $[p, n, k]$ is a $p \times n$ matrix, where nonzero entries are filled by $\pm z_i$ or $\pm z^*_i$, $i = 1, 2,..., k$, such…
We study approximation algorithms for the following three string measures that are widely used in practice: edit distance (ED), longest common subsequence (LCS), and longest increasing sequence (LIS). All three problems can be solved…
Graphs with high symmetry or regularity are the main source for experimentally hard instances of the notoriously difficult graph isomorphism problem. In this paper, we study the computational complexity of isomorphism testing for line…
Consider the fundamental task of finding independent sets of (constant) size $k$ in a given $n$-node hypergraph. How is the time complexity affected by the sparsity of the input, i.e., the number of hyperedges $m$? Tur\'{a}n's theorem…
We consider the problem of constructing linear Maximum Distance Separable (MDS) error-correcting codes with generator matrices that are sparsest and balanced. In this context, sparsest means that every row has the least possible number of…
Assigning jobs onto identical machines with the objective to minimize the maximal load is one of the most basic problems in combinatorial optimization. Motivated by product planing and data placement, we study a natural extension called…
This paper presents an efficient 51 lines Matlab code to solve topology optimization problems. By the fact that the presented code is based on an hard 0-1 optimization method that handles the integer part of the optimization in a simple…
The $k$-of-$n$ testing problem involves performing $n$ independent tests sequentially, in order to determine whether/not at least $k$ tests pass. The objective is to minimize the expected cost of testing. This is a fundamental and…