Related papers: An Efficient Algorithm for Group Testing with Runl…
We consider the problem of efficiently designing sets (codes) of equal-length DNA strings (words) that satisfy certain combinatorial constraints. This problem has numerous motivations including DNA computing and DNA self-assembly. Previous…
We study the problem of group testing with a non-adaptive randomized algorithm in the random incidence design (RID) model where each entry in the test is chosen randomly independently from $\{0,1\}$ with a fixed probability $p$. The…
In nonadaptive group testing, the main research objective is to design an efficient algorithm to identify a set of up to $t$ positive elements among $n$ samples with as few tests as possible. Disjunct matrices and separable matrices are two…
Let $n, r, k$ be positive integers such that $3\leq k < n$ and $2\leq r \leq k-1$. Let $m(n, r, k)$ denote the maximum number of edges an $r$-uniform hypergraph on $n$ vertices can have under the condition that any collection of $i$ edges,…
In this paper, we study upper bounds on the minimum length of frameproof codes introduced by Boneh and Shaw to protect copyrighted materials. A $q$-ary $(k,n)$-frameproof code of length $t$ is a $t \times n$ matrix having entries in…
The fundamental result of Li, Long, and Srinivasan on approximations of set systems has become a key tool across several communities such as learning theory, algorithms, computational geometry, combinatorics and data analysis. The goal of…
In the group testing problem, the goal is to identify a subset of defective items within a larger set of items based on tests whose outcomes indicate whether any defective item is present. This problem is relevant in areas such as medical…
We study the group testing problem where the goal is to identify a set of k infected individuals carrying a rare disease within a population of size n, based on the outcomes of pooled tests which return positive whenever there is at least…
Linear erasure codes with local repairability are desirable for distributed data storage systems. An [n, k, d] code having all-symbol (r, \delta})-locality, denoted as (r, {\delta})a, is considered optimal if it also meets the minimum…
We consider Bernoulli nonadaptive group testing with $k = \Theta(n^\theta)$ defectives, for $\theta \in (0,1)$. The practical definite defectives (DD) detection algorithm is known to be optimal for $\theta \geq 1/2$. We give a new upper…
The trapping redundancy of a linear code is the number of rows of a smallest parity-check matrix such that no submatrix forms an $(a,b)$-trapping set. This concept was first introduced in the context of low-density parity-check (LDPC) codes…
We consider an efficiently decodable non-adaptive group testing (NAGT) problem that meets theoretical bounds. The problem is to find a few specific items (at most $d$) satisfying certain characteristics in a colossal number of $N$ items as…
We present the first optimal randomized algorithm for constructing the order-$k$ Voronoi diagram of $n$ points in two dimensions. The expected running time is $O(n\log n + nk)$, which improves the previous, two-decades-old result of Ramos…
In this paper, we introduce a variation of the group testing problem where each test is specified by an ordered subset of items and returns the first defective item in the specified order or returns null if there are no defectives. We refer…
This paper performs the analysis necessary to bound the running time of known, efficient algorithms for generating all longest common subsequences. That is, we bound the running time as a function of input size for algorithms with time…
Designing short DNA words is a problem of constructing a set (i.e., code) of n DNA strings (i.e., words) with the minimum length such that the Hamming distance between each pair of words is at least k and the n words satisfy a set of…
Permutation patterns and pattern avoidance have been intensively studied in combinatorics and computer science, going back at least to the seminal work of Knuth on stack-sorting (1968). Perhaps the most natural algorithmic question in this…
We study testing of local properties in one-dimensional and multi-dimensional arrays. A property of $d$-dimensional arrays $f:[n]^d \to \Sigma$ is $k$-local if it can be defined by a family of $k \times \ldots \times k$ forbidden…
In this paper we provide an $\tilde{O}(nd+d^{3})$ time randomized algorithm for solving linear programs with $d$ variables and $n$ constraints with high probability. To obtain this result we provide a robust, primal-dual…
In this work, we obtain the following new results. 1. Given a sequence $D=((h_1,s_1), (h_2,s_2) ..., (h_n,s_n))$ of number pairs, where $s_i>0$ for all $i$, and a number $L_h$, we propose an O(n)-time algorithm for finding an index interval…