Related papers: A Problem of Knot
Tree Containment is a fundamental problem in phylogenetics useful for verifying a proposed phylogenetic network, representing the evolutionary history of certain species. Tree Containment asks whether the given phylogenetic tree (for…
Let $C_{k_1}, \ldots, C_{k_n}$ be cycles with $k_i\geq 2$ vertices ($1\le i\le n$). By attaching these $n$ cycles together in a linear order, we obtain a graph called a polygon chain. By attaching these $n$ cycles together in a cyclic…
The statistical mechanics of a long knotted collapsed polymer is determined by a free-energy with a knot-dependent subleading term, which is linked to the length of the shortest polymer that can hold such knot. The only other parameter…
Twisted knot theory introduced by M. Bourgoin is a generalization of knot theory. It leads us to the notion of twisted virtual braids. In this paper we show theorems for twisted links corresponding to the Alexander theorem and the Markov…
Knot theory is the Mathematical study of knots. In this paper we have studied the Composition of two knots. Knot theory belongs to Mathematical field of Topology, where the topological concepts such as topological spaces, homeomorphisms,…
Trees or rooted trees have been generously studied in the literature. A forest is a set of trees or rooted trees. Here we give recurrence relations between the number of some kind of rooted forest with $k$ roots and that with $k+1$ roots on…
We develop a model characterizing all possible knots and links arising from recombination starting with a twist knot substrate, extending previous work of Buck and Flapan. We show that all knot or link products fall into three…
Phylogenetic networks are often constructed by merging multiple conflicting phylogenetic signals into a directed acyclic graph. It is interesting to explore whether a network constructed in this way induces biologically-relevant…
We prove non-asymptotic stretched exponential tail bounds on the height of a randomly sampled node in a random combinatorial tree, which we use to prove bounds on the heights and widths of random trees from a variety of models. Our results…
Here we present in a single essay a combination and completion of the several aspects of the problem of randomness of individual objects which of necessity occur scattered in our texbook "An Introduction to Kolmogorov Complexity and Its…
We consider the problem of deciding whether a polygonal knot in 3-dimensional Euclidean space is unknotted, capable of being continuously deformed without self-intersection so that it lies in a plane. We show that this problem, {\sc…
Rotation distance between rooted binary trees is the minimum number of simple rotations needed to transform one tree into the other. Computing the rotation distance between a pair of rooted trees can be quickly reduced in cases where there…
In this paper, we address the problem of packing large trees in $G_{n,p}$. In particular, we prove the following result. Suppose that $T_1, \dotsc, T_N$ are $n$-vertex trees, each of which has maximum degree at most $(np)^{1/6} / (\log…
The Joint Crossing Number problem asks for a simultaneous embedding of two disjoint graphs into one surface such that the number of edge crossings (between the two graphs) is minimized. It was introduced by Negami in 2001 in connection with…
This mini-course was given in the First Yaroslavl Summer School on Discrete and Computational Geometry in August 2012, organized by International Delaunay Laboratory "Discrete and Computational Geometry" of Demidov Yaroslavl State…
A knot is a circle piecewise-linearly embedded into the 3-sphere. The topology of a knot is intimately related to that of its exterior, which is the complement of an open regular neighborhood of the knot. Knots are typically encoded by…
A classical two-stranded rope can be made by twisting two identical strands together under strain. Despite being conceptually simple, the contact-equations for helically twisted identical strands have only been solved within the last 20…
Bukh and Conlon used random polynomial graphs to give effective lower bounds on $\mathrm{ex}(n,\mathcal{T}^\ell)$, where $\mathcal{T}^\ell$ is the $\ell$th power of a balanced rooted tree $T$. We extend their result to give effective lower…
We study the average height of random trees generated by leaf-centric binary tree sources as introduced by Zhang, Yang and Kieffer. A leaf-centric binary tree source induces for every $n \geq 2$ a probability distribution on the set of…
An old conjecture of Ringel states that every tree with $m$ edges decomposes the complete graph $K_{2m+1}$. The best known lower bound for the order of a complete graph which admits a decomposition by every given tree with $m$ edges is…